Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq884 109 6e-19 seq208 109 6e-19 seq341 107 2e-18 seq3178 105 7e-18 seq71 105 7e-18 seq1493 104 3e-17 seq564 104 3e-17 seq186 102 9e-17 seq22 102 9e-17 seq10 102 9e-17 seq147 98.7 1e-15 seq4978 96.9 4e-15 seq251 96.9 4e-15 seq93 96.9 4e-15 seq2 93.3 5e-14 seq257 89.7 6e-13 seq1991 84.2 2e-11 >seq884 Length=173229 Score = 109 bits (120), Expect = 6e-19 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 38177 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 38236 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || |||||||||||||||||||||| Sbjct 38237 CTTACCACTATACTACCGAGGATTG 38261 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 2481 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2540 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| |||||||||||||||||||||| Sbjct 2541 ACTTACCACTATACTACCGAGGATTG 2566 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 7111 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7052 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| |||||||||||||||||||||| Sbjct 7051 ACTTACCACTATACTACCGAGGATTG 7026 >seq208 Length=594663 Score = 109 bits (120), Expect = 6e-19 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 1018 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1077 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || |||||||||||||||||||||| Sbjct 1078 CTTACCACTATACTACCGAGGATTG 1102 >seq341 Length=494976 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 193757 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 193698 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| |||||||||||||||||||||| Sbjct 193697 ACTTACCACTATACTACCGAGGATTG 193672 Score = 104 bits (114), Expect = 3e-17 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||||| |||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 231038 AAAAATTTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 230979 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| ||||||||||||||||||| || Sbjct 230978 ACTTACCACTATACTACCGAGGACTG 230953 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 235435 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 235494 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 235495 CTTACCACTATACTACCGAGGA 235516 Score = 102 bits (112), Expect = 9e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 189124 TTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 189183 Query 57063 ACTATACTACCGAGGATTG 57081 ||||||||||||||||||| Sbjct 189184 ACTATACTACCGAGGATTG 189202 >seq3178 Length=39119 Score = 105 bits (116), Expect = 7e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 3456 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3515 Query 57057 CTCACCACTATACTACCGAGGATTG 57081 || ||||||||||||||||||| || Sbjct 3516 CTTACCACTATACTACCGAGGACTG 3540 >seq71 Length=1863596 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1289175 AAAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1289116 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1289115 TTACCACTATACTACCGAGGA 1289095 >seq1493 Length=111453 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 104106 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 104047 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 104046 CTTACCACTATACTACCGAGGA 104025 >seq564 Length=290911 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||| | ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 175229 AAAAATTTCCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 175288 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || ||||||||||||||||||||| Sbjct 175289 CTTACCACTATACTACCGAGGATT 175312 >seq186 Length=692473 Score = 102 bits (112), Expect = 9e-17 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGG-TCTCCCGCGTGACAGGCGGACAT 57055 |||||||||| ||| |||| | |||||||||| || ||||||||||||||||||| || Sbjct 111252 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGGTCTCCCGCGTGACAGGCGGGGAT 111311 Query 57056 ACTCACCACTATACTACCGAGGATT 57080 ||| ||||||||||||||||||||| Sbjct 111312 ACTTACCACTATACTACCGAGGATT 111336 >seq22 Length=1296824 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 740745 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 740686 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 740685 TTACCACTATACTACCGAGGACTG 740662 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 752231 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 752172 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | ||||||||||||||||||| || Sbjct 752171 TTACCACTATACTACCGAGGACTG 752148 >seq10 Length=3073041 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 709856 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 709797 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 709796 TTACCACTATACTACCGAGGA 709776 >seq147 Length=672183 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 128467 AAATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 128408 Query 57060 ACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 128407 ACCACTATACTACCGAGGA 128389 >seq4978 Length=4776 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1908 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1849 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1848 TTACCACTATACTACCGAGGA 1828 >seq251 Length=308917 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 134350 AAATATCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 134291 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 134290 TTACCACTATACTACCGAGGA 134270 >seq93 Length=972031 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| |||| |||| | |||||||||| ||||||||||||||||||||| ||||| | Sbjct 74711 AATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTA 74652 Query 57061 CCACTATACTACCGAGGA 57078 |||||||||||||||||| Sbjct 74651 CCACTATACTACCGAGGA 74634 >seq2 Length=2384549 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA- 57056 ||| |||| |||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 446127 AAATATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 446186 Query 57057 --CTCACCACTATACTACCGAGGATTG 57081 || ||||||||||||||||||| || Sbjct 446187 GTCTTACCACTATACTACCGAGGACTG 446213 >seq257 Length=825446 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 595561 CTCCCCGCCTGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 595620 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 595621 TACTACCGAGGA 595632 >seq1991 Length=14245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | || ||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 12001 CTCCCCGGCGGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 12060 Query 57067 TACTACCGA 57075 ||||||||| Sbjct 12061 TACTACCGA 12069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543050345422000