Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2302 114 1e-20 seq276 95.1 1e-14 seq231 93.3 4e-14 seq86 89.7 5e-13 >seq2302 Length=121279 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||| || || | | ||| || | |||||||| ||| Sbjct 52532 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTGC 52591 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || || |||||||| || || || ||||| || ||||| || || Sbjct 52592 TTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 52651 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || |||| | || ||||| | || | |||||| || || Sbjct 52652 GCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTTCCTGTG 52711 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||| |||||||| Sbjct 52712 AGGGTCTTTACGAAGATTTGCAT 52734 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 53672 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53731 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || |||||||| || || || ||||| || ||||| || || Sbjct 53732 TTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 53791 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | |||||||| | || | |||||| || || Sbjct 53792 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 53851 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 53852 AGGGTCTTAACGAAGATTTGCAT 53874 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 53216 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53275 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || |||||||| || || || ||||| || ||||| || || Sbjct 53276 TTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 53335 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | ||||| || | || | |||||| || || Sbjct 53336 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 53395 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 53396 AGGGTCTTAACGAAGATTTGCAT 53418 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 53444 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53503 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || ||||| || ||||| || || Sbjct 53504 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 53563 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | |||||||| | || | |||||| || || Sbjct 53564 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 53623 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 53624 AGGGTCTTAACGAAGATTTGCAT 53646 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 54128 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 54187 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || |||||||| ||||| || || Sbjct 54188 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 54247 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| || | | |||| | ||||| || | || | |||||| || || Sbjct 54248 GCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 54307 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| || |||||||| Sbjct 54308 AGGGTCTTTACAAAGATTTGCAT 54330 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| |||| || |||||||| || |||||||| || | | ||||| ||||||| Sbjct 54349 CACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTC 54408 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||| ||||| |||||| | || | || || ||||| || ||||| |||||||| ||||| Sbjct 54409 AAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTG 54468 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || |||||| || | | ||| | || ||||| | ||| | || || Sbjct 54469 GATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTT 54528 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||||||||| || || || ||||| || Sbjct 54529 ACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 52988 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53047 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || |||||||| || || || ||||| || ||||| || || Sbjct 53048 TTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 53107 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | ||||| || | || | |||||| || || Sbjct 53108 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 53167 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 53168 AGGGTCTTAACGAAGATTTGCAT 53190 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||||||||| || || | | ||||| |||||||||| ||| Sbjct 52760 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTGC 52819 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | || || ||||| || || || ||||| || ||||| || || Sbjct 52820 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 52879 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | ||||| || | || | |||||| || || Sbjct 52880 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 52939 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| |||||||| Sbjct 52940 AGGGTCTTAACGAAGATTTGCAT 52962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | ||| || |||||||||| ||| Sbjct 53900 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53959 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || || || || || || || ||||| || ||||| || || Sbjct 53960 TTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 54019 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | | |||| | |||||||| | || | |||||| || || Sbjct 54020 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 54079 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 54080 AGGGTCTTAACGAAGATCTGCAT 54102 >seq276 Length=376631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| || || || | | || || | ||| Sbjct 240723 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCT 240664 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| |||||| |||| | ||||| || || || || ||||||||||| ||| Sbjct 240663 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 240604 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | | || | || ||||| | ||||| ||| Sbjct 240603 TG-AATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGT 240545 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454 || || || | |||||| || || |||||||| || | | ||| Sbjct 240544 TTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACTGA 240501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| || || || | | || || | ||| Sbjct 241179 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCT 241120 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| |||||| |||| | ||||| || || || || ||||||||||| ||| Sbjct 241119 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 241060 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | | ||| | || ||||| | ||| | ||| Sbjct 241059 TG-AATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGT 241001 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||||| || || ||||||||| Sbjct 241000 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || |||||||| ||||| || || || | | || || | ||| Sbjct 240951 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCT 240892 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| |||||| |||| | ||||| || || || || ||||||||||| ||| Sbjct 240891 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 240832 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | | || | || ||||| | ||| | ||| Sbjct 240831 TG-AATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 240773 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||||| || || ||||||||| Sbjct 240772 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739 >seq231 Length=580210 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| ||||| ||||| | | || || | |||||||||||||||||||| | || Sbjct 340831 TTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 340890 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 | || || || ||||| || || |||||||| ||||| | |||| ||||| ||| || Sbjct 340891 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGA-TTTTGGCTTTGACATTTTC 340949 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || || | || || || | || | |||||| || || | ||||| ||||| Sbjct 340950 GATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAA 341009 Query 64435 AATTTGCATTTTAAT 64449 ||||||||| || || Sbjct 341010 AATTTGCATGTTGAT 341024 >seq86 Length=815150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | || |||||| || | || | || ||||||||||||||||||||||||| Sbjct 596440 ACCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGA 596499 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||||||| || ||||||||| | || | || ||||| || ||||| Sbjct 596500 CAAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGG 596559 Query 64336 AATTCCT 64342 ||| ||| Sbjct 596560 AATACCT 596566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499495374977000