Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 114 1e-20
seq276 95.1 1e-14
seq231 93.3 4e-14
seq86 89.7 5e-13
>seq2302
Length=121279
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || ||||||||||||||||| || || | | ||| || | |||||||| |||
Sbjct 52532 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTGC 52591
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || || || |||||||| || || || ||||| || ||||| || ||
Sbjct 52592 TTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 52651
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | || |||| | || ||||| | || | |||||| || ||
Sbjct 52652 GCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTTCCTGTG 52711
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || |||||||| ||||||||
Sbjct 52712 AGGGTCTTTACGAAGATTTGCAT 52734
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 53672 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53731
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || | || |||||||| || || || ||||| || ||||| || ||
Sbjct 53732 TTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 53791
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | |||||||| | || | |||||| || ||
Sbjct 53792 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 53851
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| ||||||||
Sbjct 53852 AGGGTCTTAACGAAGATTTGCAT 53874
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 53216 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53275
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || | || |||||||| || || || ||||| || ||||| || ||
Sbjct 53276 TTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 53335
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | ||||| || | || | |||||| || ||
Sbjct 53336 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 53395
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| ||||||||
Sbjct 53396 AGGGTCTTAACGAAGATTTGCAT 53418
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 53444 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53503
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || | || || ||||| || || || ||||| || ||||| || ||
Sbjct 53504 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 53563
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | |||||||| | || | |||||| || ||
Sbjct 53564 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 53623
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| ||||||||
Sbjct 53624 AGGGTCTTAACGAAGATTTGCAT 53646
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 54128 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 54187
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || | || || ||||| || || || |||||||| ||||| || ||
Sbjct 54188 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 54247
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
|||||| || | | |||| | ||||| || | || | |||||| || ||
Sbjct 54248 GCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 54307
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || ||||| || ||||||||
Sbjct 54308 AGGGTCTTTACAAAGATTTGCAT 54330
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||||| |||| || |||||||| || |||||||| || | | ||||| |||||||
Sbjct 54349 CACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTC 54408
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
||| ||||| |||||| | || | || || ||||| || ||||| |||||||| |||||
Sbjct 54409 AAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTG 54468
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || |||||| || | | ||| | || ||||| | ||| | || ||
Sbjct 54469 GATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTT 54528
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| ||||||||||| || || || ||||| ||
Sbjct 54529 ACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561
Score = 105 bits (116), Expect = 7e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 52988 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53047
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| || ||| | || | || |||||||| || || || ||||| || ||||| || ||
Sbjct 53048 TTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 53107
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | ||||| || | || | |||||| || ||
Sbjct 53108 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 53167
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| ||||||||
Sbjct 53168 AGGGTCTTAACGAAGATTTGCAT 53190
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || ||||||||||||||||| || || | | ||||| |||||||||| |||
Sbjct 52760 TGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTGC 52819
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| |||||| | || | || || ||||| || || || ||||| || ||||| || ||
Sbjct 52820 TTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 52879
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | ||||| || | || | |||||| || ||
Sbjct 52880 GCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTTCCAGTG 52939
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| ||||||||
Sbjct 52940 AGGGTCTTAACGAAGATTTGCAT 52962
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||||||||||||||| || | | ||| || |||||||||| |||
Sbjct 53900 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCAAGTTGC 53959
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| || ||| | || | || || || || || || || ||||| || ||||| || ||
Sbjct 53960 TTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTA 54019
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | | |||| | |||||||| | || | |||||| || ||
Sbjct 54020 GCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTTCCTGTG 54079
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| || || ||||| || |||||
Sbjct 54080 AGGGTCTTAACGAAGATCTGCAT 54102
>seq276
Length=376631
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/224 (70%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||| |||| || |||||||| ||||| || || || | | || || | |||
Sbjct 240723 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCT 240664
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| |||||| |||| | ||||| || || || || ||||||||||| |||
Sbjct 240663 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 240604
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| || | | || | || ||||| | ||||| |||
Sbjct 240603 TG-AATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGT 240545
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454
|| || || | |||||| || || |||||||| || | | |||
Sbjct 240544 TTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTTGAGACTGA 240501
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||| |||| || |||||||| ||||| || || || | | || || | |||
Sbjct 241179 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCT 241120
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| |||||| |||| | ||||| || || || || ||||||||||| |||
Sbjct 241119 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 241060
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| || | | ||| | || ||||| | ||| | |||
Sbjct 241059 TG-AATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGT 241001
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||||| || | ||||| || || |||||||||
Sbjct 241000 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||| |||| || |||||||| ||||| || || || | | || || | |||
Sbjct 240951 AGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCT 240892
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||| |||||| |||| | ||||| || || || || ||||||||||| |||
Sbjct 240891 TCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCT 240832
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| || | | || | || ||||| | ||| | |||
Sbjct 240831 TG-AATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 240773
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||||| || | ||||| || || |||||||||
Sbjct 240772 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739
>seq231
Length=580210
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
||||| ||||| ||||| | | || || | |||||||||||||||||||| | ||
Sbjct 340831 TTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 340890
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
| || || || ||||| || || |||||||| ||||| | |||| ||||| ||| ||
Sbjct 340891 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGA-TTTTGGCTTTGACATTTTC 340949
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| || || | || || || | || | |||||| || || | ||||| |||||
Sbjct 340950 GATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAA 341009
Query 64435 AATTTGCATTTTAAT 64449
||||||||| || ||
Sbjct 341010 AATTTGCATGTTGAT 341024
>seq86
Length=815150
Score = 89.7 bits (98), Expect = 5e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | || |||||| || | || | || |||||||||||||||||||||||||
Sbjct 596440 ACCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGA 596499
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | |||||||| || ||||||||| | || | || ||||| || |||||
Sbjct 596500 CAAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAGG 596559
Query 64336 AATTCCT 64342
||| |||
Sbjct 596560 AATACCT 596566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499495374977000
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