Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq117 105 5e-18 seq1096 89.7 4e-13 seq735 87.8 1e-12 >seq117 Length=769428 Score = 105 bits (116), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 108347 TCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCC 108406 |||| |||||||| ||| || || ||||| | ||| | || |||||||||| | Sbjct 431341 TCGGCGTGACGGCTGGCTCGCACAGGCTGTGGTCGCACCACGCGTACAAGGCCAAGCTAC 431282 Query 108407 CGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGT 108466 || | | | |||||||||| | | |||||| | ||| ||| ||| | | Sbjct 431281 CGCTGCGCATCATCCTGGCGCTGTTCCAGACGGTGGGTGTCCAGTACAGCATTTACAACT 431222 Query 108467 GGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACG 108526 |||||| ||| ||| || | |||||||||||| | |||||| || |||||||||||| Sbjct 431221 GGGTGCGCGACCACCGGCTGCACCACAAGTACACGGACACGGACGCGGACCCACACAACT 431162 Query 108527 CCAACAGGGGGTTCTGGTTCTCGCACGTGGGATG---GCTCATGATG 108570 | ||| | ||||||| | ||||||||| || || ||||||| || Sbjct 431161 CGAACCGCGGGTTCTTTTACTCGCACGTCGGCTGGGCGCTCATGTTG 431115 >seq1096 Length=83886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 108449 AGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGA 108508 |||||| ||| ||| | ||||| | ||| ||| | || || ||||||| | || ||| Sbjct 60270 AGAACAACATACCGGATTGGGTTCGCGACCACCGAGTGCATCACAAGTTCAGCGAGACGG 60329 Query 108509 CGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGA 108568 |||||||||||||| || |||||||| |||| |||||||| || || ||||| ||| Sbjct 60330 ACGCCGACCCACACAATGCAAACAGGGGCTTCTTCTTCTCGCATGTCGGTTGGCTGATGC 60389 Query 108569 TGACCAAGGACCCCGACGTGATCTCGGCCGGTCGA-AAAATGGACATGACGGACATATAC 108627 ||| | ||||| || | | || | | | || |||||| | ||||| || Sbjct 60390 AACGCAAACATCCCGAGGT-CTACAGAAAGGGCAAGACCATCGACATGTCTGACATCAAC 60448 Query 108628 TCCGATCCGGTGGTAGTGTGGCACACCAAGT 108658 |||||| ||||| || |||||||||| Sbjct 60449 AACGATCCACTGGTAAAGTTTCACACCAAGT 60479 >seq735 Length=263618 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 108871 GTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGAC 108930 |||||| ||||| |||||||||| |||||||||||||| |||| |||||| | ||| Sbjct 196804 GTGGCGCTTTTGGCGTTCGGCGAGGGGTGGCACAACTACCATCACGCGTTCCCGTGGGAC 196863 Query 108931 TACAAGGCCGCCGAGTTGGGGAA 108953 |||||||| |||||| |||| || Sbjct 196864 TACAAGGCGGCCGAGCTGGGCAA 196886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381661480420200