Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq2959 293 9e-75 seq14394 105 3e-18 >seq2959 Length=4395 Score = 293 bits (324), Expect = 9e-75 Identities = 461/647 (71%), Gaps = 16/647 (2%) Strand=Plus/Minus Query 14132 GCGCGGGGTATTGATTTTCTCAATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 14190 |||||| || |||||||| ||||||||| ||| ||||||| ||||| ||| Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052 Query 14191 TTGCCAACGCCGGGAGGATGTCGGTTAGCGTACTGCGAAATCCTGCATCGATGGATGACG 14250 |||| || || | |||| || | |||||||||||| ||| ||||| |||| Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992 Query 14251 AGGGCTGGGCACGTGTTGCTAACGGCATGAGTCAGCTTGCA-GATTTGGATGTATGGGTA 14309 | ||||||||| || | || ||| | || |||| ||| | || |||||| | Sbjct 991 AAGGCTGGGCAAAAGTCACCGCTGGAATGGGA-AGATTGCTTGATCTCGACGTATGGATT 933 Query 14310 GTCGATGCTT-CGCGGTTATCGGTCGAAGAAATACGCTCAATCGCAGAACGGCATAAGCA 14368 || || || | | | | || | || | || ||| | ||||| ||||| || |||| Sbjct 932 GTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGCG 874 Query 14369 GGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCCGAA 14428 | || || || || |||||| | | || || || ||||||||||| ||||| || Sbjct 873 CAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAAA 814 Query 14429 AGCAGACCGCAACGACCTCGCAATTGCTCACATCTCCGGAAGCCTGAAGGCGATGGCGAA 14488 ||||||||||||||||| || || || ||||||||||| ||||||||| ||||| || Sbjct 813 GGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGCAAA 754 Query 14489 AGACCTGAAAACACCGGTTATCTCCCTGAGTCAGCTTTCGCGCGATGTTGAGAAGCGACC 14548 ||| || ||||| || ||||| || || |||||||| || ||||||||||| ||||| || Sbjct 753 AGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGCCC 694 Query 14549 AA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAGGA 14602 | ||| || ||||| ||||| ||| |||| || || ||||||||||| ||||| Sbjct 693 GAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAGGA 634 Query 14603 CGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGATG-AGAA-CAGTAGCGCC 14660 ||| ||| |||||||||||||| || ||||| || ||||| | |||| | | || Sbjct 633 CGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--GCT 576 Query 14661 GCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACAGTTTAC 14720 ||| || || ||||||||||| || |||||||| || || ||| || || || ||| Sbjct 575 GCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCTAC 516 Query 14721 CAGCGGTTCTGTAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 14767 ||| ||| |||||| || ||| || |||||||| ||||| Sbjct 515 CAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 >seq14394 Length=813 Score = 105 bits (116), Expect = 3e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 60229 GTGATGGTTCATTACTGGTTTGCATAATGGATAGAGAACTGAGGATAAAA-GATATCCCA 60287 ||||||| ||||| ||||| |||| ||||| | || ||||||||||| | |||| | Sbjct 263 GTGATGGCTCATTGCTGGTATGCAGGATGGAAGGCGAGCTGAGGATAAAGCGCTATCGTA 322 Query 60288 AAACCCCAAAATCTCATCTTTAGGATTTGCAGAAAGGGAGGCGTAAACAAATACCCGCTC 60347 | ||| | | || ||| | |||||||||| || ||||| || | ||||| | || Sbjct 323 AGCATCCACAGCCACACCTTGAAGATTTGCAGACTGGCAGGCGAGAAGAGATACCAGTTC 382 Query 60348 ATGAAAACGGAACTAGTCCAGATGTGATGTTTGTGGTTATAACATACATCATCAACGATG 60407 | || ||||||| || || |||| || |||| ||| || |||||| |||||||||| Sbjct 383 ACGATGACGGAACGAGCCCGGATGCTATCTTTGGGGTGATCACATACTGCATCAACGATA 442 Query 60408 CTCGTTATGGTGAGTTTGATGACTACCC 60435 | ||||||||||| || | ||| Sbjct 443 TGAGGGCGGGTGAGTTTGACGATTGCCC 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198692333602650