Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2302 89.7 5e-13 >seq2302 Length=121279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||| || | ||||| ||||||||||| ||||| ||| Sbjct 52964 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53023 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || |||||||| ||||||| || ||||| || || || Sbjct 53024 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53083 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 53084 ATACCTTCCTTGTC 53097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||| || | ||||| ||||||||||| ||||| ||| Sbjct 53876 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53935 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || |||||||| ||||||| || || ||||| || || Sbjct 53936 AGGGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 53995 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 53996 ATACCTTCCTTGTC 54009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||| || | ||||| ||||||||||| ||||| ||| Sbjct 53192 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53251 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || ||||| || ||||||| || ||||| || || || Sbjct 53252 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53311 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 53312 ATACCTTCCTTGTC 53325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||||||| || | ||||| ||||||||||| ||||| ||| Sbjct 53648 CCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 53707 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || || ||||| || ||||||| || ||||| || || || Sbjct 53708 AGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGG 53767 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 53768 ATACCTTCCTTGTC 53781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475358595542000