Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq276 113 4e-20
seq231 102 7e-17
seq2302 89.7 5e-13
seq1265 82.4 7e-11
>seq276
Length=376631
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | |||| || || |||||||| || || |||||||| |||
Sbjct 241653 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241594
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||||||| ||||| || | || ||||| || || || ||
Sbjct 241593 GATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241534
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||||||||| ||| | ||| | | ||| ||||| ||
Sbjct 241533 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCT 241474
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | |||||||| || || ||||| ||||| ||||||||
Sbjct 241473 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | |||| || || |||||||| || || |||||||| |||
Sbjct 240741 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240682
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||||||| ||||| || | || ||||| || || || ||
Sbjct 240681 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240622
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||||||||| ||| | ||| | | ||| || || ||
Sbjct 240621 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCT 240562
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| | ||| | ||||| || || |||||||| ||||| |||||||||
Sbjct 240561 ACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATC 240511
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | |||| || || |||||||| || || |||||||| |||
Sbjct 240969 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240910
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||||||| ||||| || | || ||||| || || || ||
Sbjct 240909 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240850
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||||||||| ||| | ||| | | ||| || || ||
Sbjct 240849 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 240790
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | |||||||| || || ||||| ||||| ||||||||
Sbjct 240789 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | |||| || || |||||||| || || |||||||| |||
Sbjct 241425 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241366
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| |||||||| ||||| || | || ||||| || || || ||
Sbjct 241365 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241306
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || |||||||| ||||||||||| ||| | ||| | | ||| || || ||
Sbjct 241305 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 241246
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | |||||||| || || ||||| ||||| ||||||||
Sbjct 241245 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
||||| || || || | | |||| || || |||||||| || || |||||||| ||
Sbjct 241197 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCA 241138
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
| | ||| | ||| |||||||| ||||| || | || ||||| || || || ||
Sbjct 241137 GATAACG-TACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 241079
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
|| || |||||||| ||||||||||| ||| | ||| | | || || || ||
Sbjct 241078 TGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTC 241019
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| | |||||||| || || ||||| ||||| ||||||||
Sbjct 241018 TACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
>seq231
Length=580210
Score = 102 bits (112), Expect = 7e-17
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTA 45208
|||||||||| |||||||| ||| | | | ||| || | || || || ||| |
Sbjct 340829 CCTTTTGGATGTTATAATCA--GACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAA 340886
Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268
||||| ||||| || || || || || |||||||||||||| ||||| |||||
Sbjct 340887 GATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATT 340946
Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
||| | ||||| ||||||||||| || || || | || || || || || ||||| ||
Sbjct 340947 TTCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCAC 341006
Query 45329 AAAAATTTGCAT 45340
|||||||||||
Sbjct 341007 GAAAATTTGCAT 341018
>seq2302
Length=121279
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163
||||| | ||| || ||||| | |||||| | || || || ||||| ||||| || ||
Sbjct 52498 TTATTGTGCTCCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTT 52557
Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223
||| ||| | ||| ||| || | ||| ||||| || | |||| ||||||||
Sbjct 52558 ATAGTCGGAAAGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTG 52617
Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283
||| || || || ||||| || ||||| || || || | ||| | | || ||
Sbjct 52618 GTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGA 52677
Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || ||||| | |||| || || || || || || ||||| || ||||||||
Sbjct 52678 AGATTCTACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734
>seq1265
Length=163832
Score = 82.4 bits (90), Expect = 7e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCG 45296
|||||||||||||||||||| ||| | ||| | | || || ||||| || |||
Sbjct 83973 CCTTCTTTATCTTGAATTTTAGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 83914
Query 45297 AGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||||| ||||| || || || ||||| |||||||||||||||
Sbjct 83913 AGAGTAATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATC 83869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451868022793000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |