Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq276 113 4e-20 seq231 102 7e-17 seq2302 89.7 5e-13 seq1265 82.4 7e-11 >seq276 Length=376631 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | |||| || || |||||||| || || |||||||| ||| Sbjct 241653 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241594 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| || | || ||||| || || || || Sbjct 241593 GATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241534 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||| | ||| | | ||| ||||| || Sbjct 241533 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCT 241474 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 241473 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | |||| || || |||||||| || || |||||||| ||| Sbjct 240741 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240682 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| || | || ||||| || || || || Sbjct 240681 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240622 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||| | ||| | | ||| || || || Sbjct 240621 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCT 240562 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||| | ||||| || || |||||||| ||||| ||||||||| Sbjct 240561 ACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATC 240511 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | |||| || || |||||||| || || |||||||| ||| Sbjct 240969 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240910 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| || | || ||||| || || || || Sbjct 240909 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240850 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||| | ||| | | ||| || || || Sbjct 240849 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 240790 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 240789 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | |||| || || |||||||| || || |||||||| ||| Sbjct 241425 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241366 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| ||||| || | || ||||| || || || || Sbjct 241365 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241306 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||| | ||| | | ||| || || || Sbjct 241305 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 241246 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 241245 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 ||||| || || || | | |||| || || |||||||| || || |||||||| || Sbjct 241197 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCA 241138 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 | | ||| | ||| |||||||| ||||| || | || ||||| || || || || Sbjct 241137 GATAACG-TACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 241079 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || |||||||| ||||||||||| ||| | ||| | | || || || || Sbjct 241078 TGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTC 241019 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||||| || || ||||| ||||| |||||||| Sbjct 241018 TACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968 >seq231 Length=580210 Score = 102 bits (112), Expect = 7e-17 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTA 45208 |||||||||| |||||||| ||| | | | ||| || | || || || ||| | Sbjct 340829 CCTTTTGGATGTTATAATCA--GACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAA 340886 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 ||||| ||||| || || || || || |||||||||||||| ||||| ||||| Sbjct 340887 GATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATT 340946 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | ||||| ||||||||||| || || || | || || || || || ||||| || Sbjct 340947 TTCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCAC 341006 Query 45329 AAAAATTTGCAT 45340 ||||||||||| Sbjct 341007 GAAAATTTGCAT 341018 >seq2302 Length=121279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 ||||| | ||| || ||||| | |||||| | || || || ||||| ||||| || || Sbjct 52498 TTATTGTGCTCCGCCACGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTT 52557 Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 ||| ||| | ||| ||| || | ||| ||||| || | |||| |||||||| Sbjct 52558 ATAGTCGGAAAGGGTACGTCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTG 52617 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 ||| || || || ||||| || ||||| || || || | ||| | | || || Sbjct 52618 GTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGA 52677 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| | |||| || || || || || || ||||| || |||||||| Sbjct 52678 AGATTCTACTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734 >seq1265 Length=163832 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 45237 CCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCG 45296 |||||||||||||||||||| ||| | ||| | | || || ||||| || ||| Sbjct 83973 CCTTCTTTATCTTGAATTTTAGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 83914 Query 45297 AGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||||| ||||| || || || ||||| ||||||||||||||| Sbjct 83913 AGAGTAATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATC 83869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451868022793000