Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq276 111 4e-19 seq231 111 4e-19 seq2302 105 2e-17 >seq276 Length=376631 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || || || | || ||||| | || || Sbjct 240733 TCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGT 240674 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||| || || | ||||| || || || ||||| Sbjct 240673 ACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCC 240614 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| ||| |||| ||| ||| | | ||||| || |||||| |||| Sbjct 240613 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCA 240555 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || || || |||||||||||||| ||||| Sbjct 240554 AAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTG 240515 Score = 105 bits (116), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || || || | || ||||| | || || Sbjct 240961 TCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGT 240902 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||| || || | ||||| || || || ||||| Sbjct 240901 ACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCC 240842 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| ||| |||| ||| ||| | | ||||| | |||||| |||| Sbjct 240841 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCA 240783 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || ||||||||||| ||||| Sbjct 240782 AAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTG 240743 Score = 105 bits (116), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || || || | || ||||||| || || Sbjct 241189 TCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGT 241130 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||| || || | ||||| || || || ||||| Sbjct 241129 ACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCC 241070 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| ||| |||| ||| ||| | | |||| | |||||| |||| Sbjct 241069 TTCTTTGTCTTGAAT-TTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCA 241011 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || ||||||||||| ||||| Sbjct 241010 AAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTG 240971 Score = 105 bits (116), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || || || | || ||||| | ||||| Sbjct 241645 TCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGT 241586 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||| || || | ||||| || || || || || Sbjct 241585 ACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCC 241526 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| ||| |||| ||| ||| | | ||||| | |||||| |||| Sbjct 241525 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCA 241467 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || ||||||||||| ||||| Sbjct 241466 AAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTG 241427 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || || || || || | || ||||| | || || Sbjct 241417 TCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGT 241358 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||| || || | ||||| || || || || || Sbjct 241357 ACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCC 241298 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| ||| |||| ||| ||| | | ||||| | |||||| |||| Sbjct 241297 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCA 241239 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || || || ||||||||||| ||||| Sbjct 241238 AAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTG 241199 >seq231 Length=580210 Score = 111 bits (122), Expect = 4e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || |||| ||| || | ||||||||| |||||||| |||||||||| Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGAT 199558 | | ||| || || || || || |||||| || || || ||| || || || | Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGAT-TTTGGCTTTGACATTT 340947 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||||| | || || || | ||||| ||||| || || || |||||||| Sbjct 340948 TCGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACG 341007 Query 199619 AAAATTTG 199626 |||||||| Sbjct 341008 AAAATTTG 341015 >seq2302 Length=121279 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || || |||| ||||||||||| | || | ||| ||||| || || Sbjct 54355 GTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTG 54414 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||| ||||| | ||| || ||||| || ||| |||||| || || ||||| Sbjct 54415 CTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCTT 54474 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || ||| | || |||| || || || ||||| ||||| || ||||| || Sbjct 54475 AGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 54534 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||| ||||| || || Sbjct 54535 CAAAGTTTTGACAAAGATCTG 54555 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || || ||||| | ||| ||||| | | || | ||||||||| || || Sbjct 52531 GTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCAAGTTG 52590 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||||||||| ||||| ||||| |||||||| || || ||||| || || ||||| Sbjct 52591 CTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTT 52650 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||| | | || | | |||||| ||||| || || ||||| || || Sbjct 52651 GGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTTCCTGT 52710 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| Sbjct 52711 GAGGGTCTTTACGAAGATTTG 52731 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || | ||| || || || || ||||| | ||| ||||||| | || Sbjct 52741 TCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGT 52800 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 52801 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 52860 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || ||| | || || | || ||| || ||||| Sbjct 52861 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAA 52920 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 52921 TGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTG 52959 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 53197 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53256 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| |||||||| || || || Sbjct 53257 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACC 53316 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || ||| | || || | || ||| || ||||| Sbjct 53317 TTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAA 53376 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 53377 TGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTG 53415 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 54109 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 54168 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 54169 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 54228 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || || ||| | || || | || ||| || ||||| Sbjct 54229 TTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAA 54288 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || ||||| ||||| Sbjct 54289 TGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTG 54327 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 53653 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53712 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| |||||||| || || || Sbjct 53713 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACC 53772 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || ||| | | || | | ||| || ||||| Sbjct 53773 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAA 53832 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 53833 TGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTG 53871 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || | ||| || || || || ||||| | ||||||||| | | || Sbjct 53425 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53484 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||| || ||||||||||| ||||| | ||| || ||||| || || || Sbjct 53485 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 53544 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || ||| | | || | | ||| || ||||| Sbjct 53545 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAA 53604 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 53605 TGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTG 53643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178560214477975