Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2302 109 6e-19 >seq2302 Length=121279 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| || | |||| || ||||| || ||||||||||| || || || || Sbjct 53660 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53719 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || ||||| ||||| || ||||| || |||||||| | || | | |||||| Sbjct 53720 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTG 53779 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | | | | | || ||||||||| |||| || ||| Sbjct 53780 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53839 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||||||||| Sbjct 53840 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| || | |||| || ||||| || ||||||||||| || || || || Sbjct 53204 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53263 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || ||||| ||||| || ||||| || |||||||| | || | | |||||| Sbjct 53264 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTG 53323 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | | | | | || |||||||| |||| || ||| Sbjct 53324 TCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATG 53383 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||||||||| Sbjct 53384 GTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| || | |||| || ||||| || ||||||||||| || || || || Sbjct 53432 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53491 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || ||||| ||||| || ||||| || || ||||| | || | | |||||| Sbjct 53492 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTG 53551 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | | | | | || ||||||||| |||| || ||| Sbjct 53552 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53611 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||||||||| Sbjct 53612 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| || | |||| || ||||| || ||||||||||| || || || || Sbjct 53888 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53947 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || ||||| || || || ||||| || || || || | || | | |||||| Sbjct 53948 TCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTG 54007 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||| | | | | | || ||||||||| |||| || ||| Sbjct 54008 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 54067 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| ||||| Sbjct 54068 GTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565069358391000