Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq276 113 3e-20
>seq276
Length=376631
Score = 113 bits (124), Expect = 3e-20
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550
|| ||||| | ||| ||||| || || ||||| | |||||| || |||||||| ||||
Sbjct 240738 CCACCTCGAAGACGGAGTACTAAGTG--AAGTGTTGATTCTTTCTGAATATTATAGTCGG 240681
Query 39551 CCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| |||| || |||| |||||||| || ||| |||||||||| ||||| ||||| |
Sbjct 240680 --ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 240623
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||||||||||| ||||| ||| | | | | | ||||| |||
Sbjct 240622 TGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTC 240563
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || | |||||| || ||||| |||||
Sbjct 240562 TACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550
|| ||||| | ||| ||||| || || ||||| | |||||| || |||||||| ||||
Sbjct 241650 CCACCTCGAAGACGGAGTACTAAGTG--AAGTGTTGATTCTTTCTGAATATTATAGTCGG 241593
Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
||| || |||| |||||||| || ||| |||||||||| ||||| ||||| | |
Sbjct 241592 ATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTG 241533
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | ||||||||||| ||||| ||| | | | | | ||||| ||| |
Sbjct 241532 GGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTA 241473
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || ||||| || || | ||||| || ||||| |||||
Sbjct 241472 CTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 109 bits (120), Expect = 4e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550
|| ||||| | ||| ||||| || || ||||| | |||||| || |||||||| ||||
Sbjct 240966 CCACCTCGAAGACGGAGTACTAAGTG--AAGTGTTGATTCTTTCTGAATATTATAGTCGG 240909
Query 39551 CCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| |||| || |||| |||||||| || ||| |||||||||| ||||| ||||| |
Sbjct 240908 --ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 240851
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||||||||||| ||||| ||| | | | | | ||||| |||
Sbjct 240850 TGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTC 240791
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || | ||||| || ||||| |||||
Sbjct 240790 TACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 109 bits (120), Expect = 4e-19
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550
|| ||||| | ||| ||||| || || ||||| | |||||| || |||||||| ||||
Sbjct 241422 CCACCTCGAAGACGGAGTACTAAGTG--AAGTGTTGATTCTTTCTGAATATTATAGTCGG 241365
Query 39551 CCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| |||| || |||| |||||||| || ||| |||||||||| ||||| ||||| |
Sbjct 241364 --ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 241307
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||||||||||| ||||| ||| | | | | | ||||| |||
Sbjct 241306 TGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTC 241247
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || | ||||| || ||||| |||||
Sbjct 241246 TACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 100 bits (110), Expect = 2e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCGG 39550
|| ||||| | ||| ||||| || || ||||| | |||||| || |||||||| || |
Sbjct 241194 CCACCTCGAAGACGGAGTACTAAGTG--AAGTGTTGATTCTTTCTGAATATTATAGTCAG 241137
Query 39551 CCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| |||| || |||| |||||||| || ||| |||||||||| ||||| ||||| |
Sbjct 241136 --ATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGG 241079
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | ||||||||||| ||||| ||| | | | | | |||| |||
Sbjct 241078 TGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTC 241019
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || | ||||| || ||||| |||||
Sbjct 241018 TACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347268311909525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |