Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 91.5 1e-13
seq231 91.5 1e-13
>seq2302
Length=121279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || ||||| || ||||| || || ||||| || | || || || | |
Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| | |||| || |||| |||||||| || || || | ||||||
Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || || || || || || |||| || ||||| ||||||||||
Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| ||||| ||| | || || || |||||| ||||
Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 54116
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || ||||| | || || ||||| ||||| | || || ||| |
Sbjct 54561 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 54502
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | ||| | |||| || |||| |||||||| || ||||| | |||
Sbjct 54501 TCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGAC 54442
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | || || || || || || |||| ||||| || ||||||
Sbjct 54441 CAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTAC 54382
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||| || ||| | || || || || ||| |||||
Sbjct 54381 AACATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCGT 54343
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| || | || || || | |
Sbjct 53190 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53131
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| |||| | || |||| ||||| || || || || | |||||
Sbjct 53130 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53071
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || || || || || || |||| || ||||| ||||||||||
Sbjct 53070 CAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53011
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| ||||| ||| | || || || |||||| ||||
Sbjct 53010 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 52976
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| || | || || || | |
Sbjct 53418 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53359
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| |||| | || |||| ||||| || || || || | |||||
Sbjct 53358 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53299
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || || || || || || |||| || ||||| ||||||||||
Sbjct 53298 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53239
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| ||||| ||| | || || || |||||| ||||
Sbjct 53238 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53204
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| || | || || || | |
Sbjct 53646 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53587
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | ||| |||| | || |||| ||||| || || || || | ||||||
Sbjct 53586 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 53527
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || || || || || || |||| || ||||| ||||||||||
Sbjct 53526 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53467
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| ||||| ||| | || || || |||||| ||||
Sbjct 53466 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53432
>seq231
Length=580210
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| |||||||| ||||| ||||| || || || || ||||||||| | || |||||| |
Sbjct 341021 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 340962
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | ||| | |||| ||||||| || ||||| || || || ||||
Sbjct 340961 TCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 340902
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | ||| ||||| ||||| || || | || || | || ||
Sbjct 340901 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTAT 340842
Query 38421 AACATCCAAAAGG 38433
|||||||||||||
Sbjct 340841 AACATCCAAAAGG 340829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500023217072000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |