Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2302 91.5 1e-13 seq231 91.5 1e-13 >seq2302 Length=121279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || ||||| || || ||||| || | || || || | | Sbjct 54330 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 54271 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| || |||| |||||||| || || || | |||||| Sbjct 54270 GATTCCATTGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 54211 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| || ||||| |||||||||| Sbjct 54210 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 54151 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || || |||||| |||| Sbjct 54150 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 54116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| | || || ||||| ||||| | || || ||| | Sbjct 54561 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 54502 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || |||| |||||||| || ||||| | ||| Sbjct 54501 TCAGATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGAC 54442 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || || || || || || |||| ||||| || |||||| Sbjct 54441 CAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTAC 54382 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || ||| | || || || || ||| ||||| Sbjct 54381 AACATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCGT 54343 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || || || | | Sbjct 53190 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53131 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| ||||| || || || || | ||||| Sbjct 53130 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53071 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| || ||||| |||||||||| Sbjct 53070 CAACGTTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53011 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || || |||||| |||| Sbjct 53010 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 52976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || || || | | Sbjct 53418 ATGCAAATCTTCGTTAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCT 53359 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || |||| ||||| || || || || | ||||| Sbjct 53358 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAG 53299 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| || ||||| |||||||||| Sbjct 53298 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53239 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || || |||||| |||| Sbjct 53238 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53204 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | || || || | | Sbjct 53646 ATGCAAATCTTCGTTAAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCT 53587 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | ||| |||| | || |||| ||||| || || || || | |||||| Sbjct 53586 GATTCTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAA 53527 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || || || || || |||| || ||||| |||||||||| Sbjct 53526 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAAC 53467 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || || || |||||| |||| Sbjct 53466 ATTCAAAAAGAATCTACACTTCACTTGGTGTTGCG 53432 >seq231 Length=580210 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| || || || || ||||||||| | || |||||| | Sbjct 341021 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 340962 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| ||||||| || ||||| || || || |||| Sbjct 340961 TCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 340902 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | ||| ||||| ||||| || || | || || | || || Sbjct 340901 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTAT 340842 Query 38421 AACATCCAAAAGG 38433 ||||||||||||| Sbjct 340841 AACATCCAAAAGG 340829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500023217072000