Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2302 152 1e-31 seq276 122 2e-22 seq1265 100 6e-16 >seq2302 Length=121279 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||| || || ||||||||||| || || |||| ||| || | Sbjct 52516 GAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACG 52575 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 52576 TCCATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTC 52635 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||| || || ||||| | || ||| ||| ||||| | || Sbjct 52636 CTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGT 52695 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| | || |||||||| | |||||| Sbjct 52696 AATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 53425 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53484 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 53485 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 53544 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || || ||||| | || || ||||||||| | Sbjct 53545 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAA 53604 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||||||| | || || ||||| | |||||| Sbjct 53605 TGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 53653 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53712 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | ||||| |||||||| || || || Sbjct 53713 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACC 53772 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || || ||||| | || || ||||||||| | Sbjct 53773 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAA 53832 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||||||| | || || ||||| | |||||| Sbjct 53833 TGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 54109 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 54168 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||||||||| || || || Sbjct 54169 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACC 54228 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || || || || ||||||| || || |||||| || | Sbjct 54229 TTCTTTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAA 54288 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || ||||| || | |||||| Sbjct 54289 TGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 52969 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53028 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | ||||| |||||||| || || || Sbjct 53029 ACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACC 53088 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || || ||||||| || || |||||| || | Sbjct 53089 TTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAA 53148 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || ||||| | |||||| Sbjct 53149 TGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53190 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 53197 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53256 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | ||||| |||||||| || || || Sbjct 53257 ACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACC 53316 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || || ||||||| || || |||||| || | Sbjct 53317 TTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAA 53376 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || ||||| | |||||| Sbjct 53377 TGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| ||| || | |||||| || || ||||||||||| ||||| |||| ||| || Sbjct 53881 TCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGT 53940 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || ||||| || || ||||| | |||||||| ||||| || || || Sbjct 53941 ACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACC 54000 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||| || || ||||| | || || ||||||||| | Sbjct 54001 TTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAA 54060 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||||||||| | || || ||||| | ||||| Sbjct 54061 TGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | |||||| || || ||||||||||| || || || | ||| || | Sbjct 52745 AGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGT 52804 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || ||||| || || ||||| | |||||||||||||| || || ||||| Sbjct 52805 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCC 52864 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||| || || ||||||| || || |||||| || | ||| Sbjct 52865 TTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 52924 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | || || ||||| | |||||| Sbjct 52925 ATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||| || || ||||| || || ||||| || | ||| || | Sbjct 54340 GAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCG 54399 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| || ||||| || || ||||| | ||||||||||| || ||||| ||||| Sbjct 54400 TCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTC 54459 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||| || || || || || ||||||| || || || ||||| | || Sbjct 54460 TTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGT 54519 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||||||||| || || | ||||| Sbjct 54520 GATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 54558 >seq276 Length=376631 Score = 122 bits (134), Expect = 2e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| || |||| | ||| | |||||||| | || Sbjct 241627 GTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTG 241568 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| ||||| ||||| || || |||||||||||||||||||| Sbjct 241567 CTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTT 241508 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||| ||| ||| ||||| | || | || || || || Sbjct 241507 AGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 241448 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 241447 AAGGGTTTTCACAAAGATTTGCATT 241423 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| || |||| | || | |||||||| | || Sbjct 240715 GTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTG 240656 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| ||||| ||||| || || |||||||||||||||||||| Sbjct 240655 CTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTT 240596 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||| || ||| ||||| | || | || ||||| || Sbjct 240595 AGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGT 240536 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 240535 AAGAGTTTTCACAAAGATTTGCAT 240512 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| || |||| | || | |||||||| | || Sbjct 240943 GTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTG 240884 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| ||||| ||||| || || |||||||||||||||||||| Sbjct 240883 CTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTT 240824 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||| || ||| ||||| | || | || || || || Sbjct 240823 AGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 240764 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 240763 AAGGGTTTTCACAAAGATTTGCATT 240739 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| || |||| | || | |||||||| | || Sbjct 241399 GTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTG 241340 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| ||||| ||||| || || |||||||||||||||||||| Sbjct 241339 CTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTT 241280 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | ||| || ||| ||||| | || | || || || || Sbjct 241279 AGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 241220 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 241219 AAGGGTTTTCACAAAGATTTGCATT 241195 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| || || | | || | |||||||| | || Sbjct 241171 GTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTG 241112 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| ||||| ||||| || || |||||||||||||||||||| Sbjct 241111 CTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTT 241052 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| | || || ||| ||||| | || | || || || || Sbjct 241051 CGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 240992 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||||| || || | ||||||| Sbjct 240991 AAGGGTTTTCACAAAGATTTGCATT 240967 >seq1265 Length=163832 Score = 100 bits (110), Expect = 6e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || |||||||| || ||||||||||| | || || | ||||||||| | || Sbjct 84811 GTGAAGTGTTGACTCTTTCTGTATATTGTAATCAGATAGCGTGCGCCCATCTTCCAATTG 84752 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||| || || ||||| |||||||| || |||||||||||| Sbjct 84751 CTTACCAGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCT 84709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109141500550475