Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 129 4e-25
seq276 107 1e-18
>seq2302
Length=121279
Score = 129 bits (142), Expect = 4e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| || |||||| |||||||||||||| |||||| | ||| ||||
Sbjct 52522 CAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATC 52581
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || || |||||||||||| | || | || ||||||||
Sbjct 52582 TTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 52641
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 52642 TTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGT 52701
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 52702 CTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 52735
Score = 120 bits (132), Expect = 2e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 53206 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 53265
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | |||||||||||| | || | || ||||||||
Sbjct 53266 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 53325
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 53326 TTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGT 53385
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 53386 CTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53419
Score = 120 bits (132), Expect = 2e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 53662 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 53721
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | |||||||||||| | || | || ||||||||
Sbjct 53722 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 53781
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 53782 TTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGT 53841
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 53842 CTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875
Score = 120 bits (132), Expect = 2e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 54118 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 54177
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | ||||| |||||| | || | || || |||||
Sbjct 54178 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTC 54237
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||| || | | || || ||| | || || || | || |||||
Sbjct 54238 TTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGT 54297
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| |||||||| ||||||
Sbjct 54298 CTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331
Score = 116 bits (128), Expect = 2e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 52978 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 53037
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||| ||||| || | |||||||||||| | || | || ||||||||
Sbjct 53038 TTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTC 53097
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 53098 TTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGT 53157
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 53158 CTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53191
Score = 116 bits (128), Expect = 2e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 53434 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 53493
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | ||||| |||||| | || | || ||||||||
Sbjct 53494 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTC 53553
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 53554 TTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGT 53613
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 53614 CTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647
Score = 111 bits (122), Expect = 1e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| || |||||| |||||||||||||| ||||| | ||| | ||
Sbjct 52750 CAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGTCCGTC 52809
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | ||||| |||||| | || | || ||||||||
Sbjct 52810 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTC 52869
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 52870 TTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGT 52929
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||| ||||||
Sbjct 52930 CTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 52963
Score = 111 bits (122), Expect = 1e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||||| ||| |||||| |||||||| ||||| |||||| | ||| | ||
Sbjct 53890 CAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTC 53949
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||| ||||| || | ||||| || ||| | || | || ||||||||
Sbjct 53950 TTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTC 54009
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| || || | | || || ||| | || || || | || |||||
Sbjct 54010 TTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGT 54069
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| ||||| ||||| || ||||||||||||
Sbjct 54070 CTTTCCTGTGAGGGTCTTAACGAAGATCTGCATA 54103
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| || ||||||| || ||||||||| ||||| ||||| ||||| | ||| | ||
Sbjct 54346 CAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTC 54405
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||||||||| || | ||||| ||||| | || | || || |||||
Sbjct 54406 TTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTC 54465
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||| || | | || || || | |||||| || | || || ||
Sbjct 54466 TTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGT 54525
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
||| || || | ||| || |||||||||||||| ||
Sbjct 54526 TTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561
>seq276
Length=376631
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||||| ||| |||||||||||| |||||||| || | | || |||| |||
Sbjct 240720 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240661
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||||||||| |||| ||| || || ||| | || | || || ||||| |
Sbjct 240660 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240601
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || ||| || | | || || || | || || || | ||||||||||||
Sbjct 240600 ATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTT 240541
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || ||||| ||||||||||| ||||| ||
Sbjct 240540 CCAGTAAGAGTTTTCACAAAGATTTGCATCTT 240509
Score = 98.7 bits (108), Expect = 6e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||||| ||| |||||||||||| |||||||| || | | || |||| |||
Sbjct 241176 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCC 241117
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||||||||| |||| ||| || || ||| | || | || || ||||| |
Sbjct 241116 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 241057
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| ||| ||| || | | || || || | || || || | || ||||||||
Sbjct 241056 ATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240997
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||||||||| |||||
Sbjct 240996 CCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
Score = 98.7 bits (108), Expect = 6e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||||| ||| |||||||||||| |||||||| || | | || |||| |||
Sbjct 241404 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 241345
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||||||||| |||| ||| || || ||| | || | ||| || ||||| |
Sbjct 241344 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241285
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || ||| || | | || || || | || || || | || ||||||||
Sbjct 241284 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 241225
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||||||||| |||||
Sbjct 241224 CCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 98.7 bits (108), Expect = 6e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||||| ||| |||||||||||| |||||||| || | | || |||| |||
Sbjct 241632 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCC 241573
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||||||||| |||| ||| || || ||| | || | ||| || ||||| |
Sbjct 241572 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGA 241513
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || ||| || | | || || || | || || || | || ||||||||
Sbjct 241512 ATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTG 241453
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||||||||| |||||
Sbjct 241452 CCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||||| ||| |||||||||||| |||||||| || | | || |||| |||
Sbjct 240948 ACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCC 240889
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||||||||| |||| ||| || || ||| | || | || || ||||| |
Sbjct 240888 AATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGA 240829
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || ||| || | | || || || | || || || | || ||||||||
Sbjct 240828 ATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTG 240769
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || ||||||||||| |||||
Sbjct 240768 CCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324538941407400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |