Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq35 179 4e-40
seq1042 129 7e-25
seq757 105 8e-18
seq1089 102 9e-17
seq474 102 9e-17
seq7356 100 3e-16
seq989 91.5 2e-13
>seq35
Length=1961283
Score = 179 bits (198), Expect = 4e-40
Identities = 173/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| |||| ||||| ||| |||||||| ||||| | ||||||||| |
Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| ||||| |||| | |||||| |||||| || ||||||||||| ||||| ||||| |
Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
|||||| ||||| ||| || | || | | ||| | |||||||| || |||||||| |
Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204
|||||||||||||||| ||||| || || |||| ||||||||
Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA 1196911
Score = 134 bits (148), Expect = 2e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284
|||| || ||||| || || ||||| || |||||||||||||| |||||||| ||
Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772
Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344
|| || || || ||||||||||| || || |||| || ||||| | | ||||||||
Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712
Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404
|| | ||||||||| || || ||||| ||| ||||||||||||||||| || |||
Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652
Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448
|| || ||||| || ||| | ||||||| | || |||
Sbjct 1196651 AAGTGACGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608
>seq1042
Length=111944
Score = 129 bits (142), Expect = 7e-25
Identities = 130/169 (77%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284
||||||| ||||| |||||| ||||| || |||||||||||||| ||||| |||||
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344
|| || || || ||||||||||| || || |||| || ||||| | |||||| ||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|| | ||||||| ||||||| |||| ||| || |||||||||| ||
Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTA 80695
Score = 120 bits (132), Expect = 3e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070
||| ||||| || |||| | ||||||||| | ||||| ||| |||| || |||
Sbjct 80246 AAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTCAACCATGTTATTGAAGGAACATTTCC 80305
Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130
||| || |||||||||| || || ||||| | |||| ||||| ||| || | || |
Sbjct 80306 AGATAAAAATATACCTTTAACAGCAGCAAATGTCACTAACCTTTCACCAAAAGTTGCTTT 80365
Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190
| ||| | ||||||||| || ||||||| ||| | ||||||||||||||||| || ||
Sbjct 80366 ACTATCAGTAATCCATTTAAGAACCCAATCTGCCATTTTTTTTACACATGGCATGGTTTC 80425
Query 19191 TATAGAATTAAATA 19204
||| ||||| ||
Sbjct 80426 AGTAGCATTAATTA 80439
>seq757
Length=226151
Score = 105 bits (116), Expect = 8e-18
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597
||||||||| ||||| | ||| ||||||||| || || || | | ||| |||
Sbjct 190776 CCTTTACTTGTCGGA---CTATTTGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGT 190832
Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657
|||||||||||||| || |||| |||||| || ||||| |||| |||||| |||| |
Sbjct 190833 TCACAACTTGCTTCTAAAGCACCATAATAAATAGTTTCGTGAATTTGTATGTTAAGATAC 190892
Query 47658 CTTGCTTC-TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716
|| ||||| | || | ||||||||||| ||| |||||| ||||||||
Sbjct 190893 CTAGCTTCTTTATTA-TCAAAAGGATATCTCATTTTAATAAATAAATCTGCTAATCCTTG 190951
Query 47717 AACACCAATACCAAT 47731
| |||||| |||||
Sbjct 190952 GATACCAATTCCAAT 190966
Score = 100 bits (110), Expect = 3e-16
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416
||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||| |||||
Sbjct 204887 ATATAAATTTGTTGTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGA 204828
Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTT 47464
|| |||||||| | ||| | ||| || |||||| || || | |||
Sbjct 204827 AGCAGTAGGCATTGGTGCTAATAACAATGAATTTCTAACACCGTGTTT 204780
>seq1089
Length=106908
Score = 102 bits (112), Expect = 9e-17
Identities = 107/138 (78%), Gaps = 6/138 (4%)
Strand=Plus/Plus
Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386
|||||||||| | ||||| ||| | ||||| ||| |||| ||||||||||||||
Sbjct 30801 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTGTATGGTTCTATAGA 30857
Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446
||| |||||||||| |||||| || ||||| || || ||||| | ||| | ||| ||
Sbjct 30858 TTCGTTATTTCCAAGAATTTGTGCCGTTGAAGCCGTGGGCATCGGTGCTAATAACAATGA 30917
Query 47447 ATTTCTTACTCCATATTT 47464
|||||| ||||||| |||
Sbjct 30918 ATTTCTAACTCCATGTTT 30935
>seq474
Length=173882
Score = 102 bits (112), Expect = 9e-17
Identities = 107/138 (78%), Gaps = 6/138 (4%)
Strand=Plus/Minus
Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386
|||||||||| | ||||| ||| | ||||| ||| |||| ||||||||||||||
Sbjct 165561 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTGTATGGTTCTATAGA 165505
Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446
||| |||||||||| |||||| || ||||| || || ||||| | ||| | ||| ||
Sbjct 165504 TTCGTTATTTCCAAGAATTTGTGCCGTTGAAGCCGTGGGCATCGGTGCTAATAACAATGA 165445
Query 47447 ATTTCTTACTCCATATTT 47464
|||||| ||||||| |||
Sbjct 165444 ATTTCTAACTCCATGTTT 165427
>seq7356
Length=7625
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597
||||||||| ||||| | ||| ||||||||| || || || | | ||| |||
Sbjct 4512 CCTTTACTTGTCGGA---CTATTTGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGT 4456
Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657
|||||||||||||| || |||| |||||| || ||||| |||| |||||| ||||
Sbjct 4455 TCACAACTTGCTTCTAAAGCACCATAATAAATAGTTTCGTGAATTTGTATGTTAAGATAT 4396
Query 47658 CTTGCTTCTG-ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716
|| |||||| || || |||||||||| ||| |||||| ||||||||
Sbjct 4395 CTAGCTTCTTTATTAT-CAAAAGGATATCTCATTTTAATAAATAAATCTGCTAATCCTTG 4337
Query 47717 AACACCAATACCAAT 47731
| |||||| |||||
Sbjct 4336 GATACCAATTCCAAT 4322
>seq989
Length=145162
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/195 (70%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597
||||||||| ||||| | ||| | |||| ||||| || || | | |||| |||
Sbjct 126992 CCTTTACTTGTCGGA---CTATTTGGAAATGTCTTATACGGTCCATTTGTAGTAGCTAGT 126936
Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657
|||||||||||||| || |||| |||||| || | ||| |||| | |||| |||
Sbjct 126935 TCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTTAAGAACT 126876
Query 47658 CTTGCTTCTG-ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716
|| |||||| || || |||||||||| ||| |||||| ||||||||
Sbjct 126875 CTAGCTTCTTTATTAT-CAAAAGGATATTTCATTTTAATAAATAAATCTGCTAATCCTTG 126817
Query 47717 AACACCAATACCAAT 47731
|||||||| |||||
Sbjct 126816 GACACCAATTCCAAT 126802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561940694337000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |