Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq35 179 4e-40 seq1042 129 7e-25 seq757 105 8e-18 seq1089 102 9e-17 seq474 102 9e-17 seq7356 100 3e-16 seq989 91.5 2e-13 >seq35 Length=1961283 Score = 179 bits (198), Expect = 4e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| |||| ||||| ||| |||||||| ||||| | ||||||||| | Sbjct 1197132 CCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCT 1197073 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| |||| | |||||| |||||| || ||||||||||| ||||| ||||| | Sbjct 1197072 TCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATG 1197013 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| ||||| ||| || | || | | ||| | |||||||| || |||||||| | Sbjct 1197012 CAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||||||||||||| ||||| || || |||| |||||||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATA 1196911 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 |||| || ||||| || || ||||| || |||||||||||||| |||||||| || Sbjct 1196831 TCTTGAATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATT 1196772 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || || || ||||||||||| || || |||| || ||||| | | |||||||| Sbjct 1196771 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCA 1196712 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || | ||||||||| || || ||||| ||| ||||||||||||||||| || ||| Sbjct 1196711 ACAAGATTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATA 1196652 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATC 19448 || || ||||| || ||| | ||||||| | || ||| Sbjct 1196651 AAGTGACGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608 >seq1042 Length=111944 Score = 129 bits (142), Expect = 7e-25 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||||| ||||| |||||| ||||| || |||||||||||||| ||||| ||||| Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || || || ||||||||||| || || |||| || ||||| | |||||| || Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 || | ||||||| ||||||| |||| ||| || |||||||||| || Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTA 80695 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 ||| ||||| || |||| | ||||||||| | ||||| ||| |||| || ||| Sbjct 80246 AAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTCAACCATGTTATTGAAGGAACATTTCC 80305 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 ||| || |||||||||| || || ||||| | |||| ||||| ||| || | || | Sbjct 80306 AGATAAAAATATACCTTTAACAGCAGCAAATGTCACTAACCTTTCACCAAAAGTTGCTTT 80365 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | ||| | ||||||||| || ||||||| ||| | ||||||||||||||||| || || Sbjct 80366 ACTATCAGTAATCCATTTAAGAACCCAATCTGCCATTTTTTTTACACATGGCATGGTTTC 80425 Query 19191 TATAGAATTAAATA 19204 ||| ||||| || Sbjct 80426 AGTAGCATTAATTA 80439 >seq757 Length=226151 Score = 105 bits (116), Expect = 8e-18 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 ||||||||| ||||| | ||| ||||||||| || || || | | ||| ||| Sbjct 190776 CCTTTACTTGTCGGA---CTATTTGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGT 190832 Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 |||||||||||||| || |||| |||||| || ||||| |||| |||||| |||| | Sbjct 190833 TCACAACTTGCTTCTAAAGCACCATAATAAATAGTTTCGTGAATTTGTATGTTAAGATAC 190892 Query 47658 CTTGCTTC-TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || ||||| | || | ||||||||||| ||| |||||| |||||||| Sbjct 190893 CTAGCTTCTTTATTA-TCAAAAGGATATCTCATTTTAATAAATAAATCTGCTAATCCTTG 190951 Query 47717 AACACCAATACCAAT 47731 | |||||| ||||| Sbjct 190952 GATACCAATTCCAAT 190966 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||| ||||| Sbjct 204887 ATATAAATTTGTTGTATATGGTTCAATAGATTCATTATTGCCAAGAATTTGAGCTGTTGA 204828 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTT 47464 || |||||||| | ||| | ||| || |||||| || || | ||| Sbjct 204827 AGCAGTAGGCATTGGTGCTAATAACAATGAATTTCTAACACCGTGTTT 204780 >seq1089 Length=106908 Score = 102 bits (112), Expect = 9e-17 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||||||| | ||||| ||| | ||||| ||| |||| |||||||||||||| Sbjct 30801 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTGTATGGTTCTATAGA 30857 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||| |||||||||| |||||| || ||||| || || ||||| | ||| | ||| || Sbjct 30858 TTCGTTATTTCCAAGAATTTGTGCCGTTGAAGCCGTGGGCATCGGTGCTAATAACAATGA 30917 Query 47447 ATTTCTTACTCCATATTT 47464 |||||| ||||||| ||| Sbjct 30918 ATTTCTAACTCCATGTTT 30935 >seq474 Length=173882 Score = 102 bits (112), Expect = 9e-17 Identities = 107/138 (78%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 47330 AAATTCTCCAG--ATAGTAC-TCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 |||||||||| | ||||| ||| | ||||| ||| |||| |||||||||||||| Sbjct 165561 AAATTCTCCACTAAGAGTACGTCT---GTAATATAAATTTGTTGTGTATGGTTCTATAGA 165505 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||| |||||||||| |||||| || ||||| || || ||||| | ||| | ||| || Sbjct 165504 TTCGTTATTTCCAAGAATTTGTGCCGTTGAAGCCGTGGGCATCGGTGCTAATAACAATGA 165445 Query 47447 ATTTCTTACTCCATATTT 47464 |||||| ||||||| ||| Sbjct 165444 ATTTCTAACTCCATGTTT 165427 >seq7356 Length=7625 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 ||||||||| ||||| | ||| ||||||||| || || || | | ||| ||| Sbjct 4512 CCTTTACTTGTCGGA---CTATTTGGATATGTTTTGTACGGTCCATTTTTAGAAGCTAGT 4456 Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 |||||||||||||| || |||| |||||| || ||||| |||| |||||| |||| Sbjct 4455 TCACAACTTGCTTCTAAAGCACCATAATAAATAGTTTCGTGAATTTGTATGTTAAGATAT 4396 Query 47658 CTTGCTTCTG-ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || |||||| || || |||||||||| ||| |||||| |||||||| Sbjct 4395 CTAGCTTCTTTATTAT-CAAAAGGATATCTCATTTTAATAAATAAATCTGCTAATCCTTG 4337 Query 47717 AACACCAATACCAAT 47731 | |||||| ||||| Sbjct 4336 GATACCAATTCCAAT 4322 >seq989 Length=145162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 47541 CCTTTACTTATCGGAGAACCATT---ATATGTTTTATAAGGACCGTATAGTTTAGCGAGT 47597 ||||||||| ||||| | ||| | |||| ||||| || || | | |||| ||| Sbjct 126992 CCTTTACTTGTCGGA---CTATTTGGAAATGTCTTATACGGTCCATTTGTAGTAGCTAGT 126936 Query 47598 TCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTC 47657 |||||||||||||| || |||| |||||| || | ||| |||| | |||| ||| Sbjct 126935 TCACAACTTGCTTCTAAAGCACCATAATAAATAGATTCGTGAATTTGTGTGTTAAGAACT 126876 Query 47658 CTTGCTTCTG-ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 || |||||| || || |||||||||| ||| |||||| |||||||| Sbjct 126875 CTAGCTTCTTTATTAT-CAAAAGGATATTTCATTTTAATAAATAAATCTGCTAATCCTTG 126817 Query 47717 AACACCAATACCAAT 47731 |||||||| ||||| Sbjct 126816 GACACCAATTCCAAT 126802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561940694337000