Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq3495 185 3e-42 seq14394 125 2e-24 seq2024 86.0 2e-12 >seq3495 Length=4271 Score = 185 bits (204), Expect = 3e-42 Identities = 286/405 (71%), Gaps = 10/405 (2%) Strand=Plus/Minus Query 21356 CCAAAACCTGTAGGGCTAACAGCATCTGAAGATGTCGTTTTTGGGATCAATATCACTTGG 21415 || ||||| || ||| | || || |||||| | || || ||||| ||| | | | ||| Sbjct 830 CCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTGGTATCGAGCTGAACTGG 771 Query 21416 GGATTCCCTGCTGATACCTCAGACACATTAAGCACAGAGCTGCAATACAGCGTTACGGCT 21475 || ||||| || | ||| ||||| | | || || | || |||||| | || | | Sbjct 770 GGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTCAGTACAGCCTGACCGGT 711 Query 21476 GACGGTTCAAATCCTATTTTGTTGGCGTCTGTACCTTATCCTCTA---AAACTTTATCAG 21532 || || | || || || | ||||||||| || | ||| |||||| Sbjct 710 ACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGCAGCGCAAA---TATCAG 654 Query 21533 CAGATGGGCCTTAAGGCCGGTCAGGAATTCTGGTACCGCGCACAGCTGGTTGACCGAACC 21592 |||||||||||||| || || |||| |||||||||||||| |||||||| ||||||||| Sbjct 653 CAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGCTGGTGGACCGAACC 594 Query 21593 GGTAACGAATCAGGATACACAGAATGGGTTCGTGGGCAGGCAAGTATAGATGTTTCTGAT 21652 || || ||||| || ||||| |||| || ||||| ||||| || | ||||| || ||| Sbjct 593 GGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCGTTGATGTATCGGAT 534 Query 21653 GTCTCCAGTGTGATTTTGGAGGACATGAAGGAATCTCAGACG--TTCAAAGACCTGATCG 21710 || | || ||| |||||||||| || || |||||| | ||||| |||||||||| Sbjct 533 ATCACAGATGCAATTCTGGAGGACATTAA--AACCTCAGAAGTCTTCAAGGACCTGATCG 476 Query 21711 AGAGCGCAGTGGACAGCAATGCAAAAATTGCTGGCATGGCTGATG 21755 || || |||| ||||| || ||| | |||| || |||||| Sbjct 475 AGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATG 431 >seq14394 Length=813 Score = 125 bits (138), Expect = 2e-24 Identities = 309/456 (68%), Gaps = 16/456 (4%) Strand=Plus/Plus Query 25331 ATAGATCTACACCTCCTTTAA-TAGTACTGTATGTATAAACAGTG-CTAAAG-AGGTGCA 25387 || |||| ||||| || | | || |||||||| ||| ||||| ||| | ||||| | Sbjct 32 ATTGATCGACACCGCCGATCAGTACTACTGTATTAATATACAGTAACTATCGGAGGTG-A 90 Query 25388 GAACATGGGATTCCCATCTCCAGCAGCAGACTATGTTGAAGATCGCATATCGCTCGACAA 25447 | ||||||||||| ||| ||| |||||| || ||||| ||||||||||| ||||| Sbjct 91 GTT-ATGGGATTCCCGAGTCCGGCACAAGACTACGTAGAAGAGCGCATATCGCTAGACAA 149 Query 25448 ACGGCTTATCGCGCA-TCCGGCAGCCACGTACATGATGATAGCGGGCTCTACATACCTGC 25506 || | || ||| || || || |||||| | || | ||| || | || || | Sbjct 150 GCGCATCAT-AAGCAGACCAGCGGCTACGTACTTTATTAGAGCTGGTGCGACGCACTATC 208 Query 25507 GAGCTGGCATAATGAAGGGCGCAATGCTTATCGTCGACTCGTCGCTGACACCAAAAGACG 25566 | | ||||| ||||| ||||| |||| | ||||| |||| |||| || || | Sbjct 209 GTGAAGGCATCATGAACGGCGCTCTGCTGGTAGTCGATGCGTCACTGAATCCGTGTGATG 268 Query 25567 GTTCTCTTCTGGTGTGCGCTATAGACGGTGAGTTCAGGATTATGCGTTACAGGACGCATC 25626 | || | ||||| ||| || || || ||| | ||||| | ||| || | | ||||| Sbjct 269 GCTCATTGCTGGTATGCAGGATGGAAGGCGAGCTGAGGATAAAGCGCTATCGTAAGCATC 328 Query 25627 CGCAGCCTTGTCTGGAAAACCCTGAAAATGGAAGGAGGGAGTCGTTACC-GTTGAAAGAC 25685 | ||||| || ||| | | | ||| ||| | || | |||| ||| || Sbjct 329 CACAGCCACACCTTGAAGATTTGCAGACTGGCAGGCGAGAAGAGATACCAGTT----CAC 384 Query 25686 GATGTGTCGGATACATCGCGG--CCGGTGTTTGGGGTGATCACCTACAGCATCAACGATG 25743 || || |||| | | ||| | | |||||||||||||| ||| ||||||||||| Sbjct 385 GA--TGACGGAACGAGCCCGGATGCTATCTTTGGGGTGATCACATACTGCATCAACGATA 442 Query 25744 CGCGTTCTGGTGAGTTCGACGACTGCCCGGTGATGT 25779 | | | |||||||| ||||| |||||||| |||| Sbjct 443 TGAGGGCGGGTGAGTTTGACGATTGCCCGGTTATGT 478 Score = 80.6 bits (88), Expect = 8e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTA 26010 ||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 605 CTTCTAAGCCGTATGTCGTACGTTCGAATCCTACAGGGCGTGCCATTTA 653 >seq2024 Length=8047 Score = 86.0 bits (94), Expect = 2e-12 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 26008 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7791 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 7745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158476562527300