Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 185 3e-42
seq14394 125 2e-24
seq2024 86.0 2e-12
>seq3495
Length=4271
Score = 185 bits (204), Expect = 3e-42
Identities = 286/405 (71%), Gaps = 10/405 (2%)
Strand=Plus/Minus
Query 21356 CCAAAACCTGTAGGGCTAACAGCATCTGAAGATGTCGTTTTTGGGATCAATATCACTTGG 21415
|| ||||| || ||| | || || |||||| | || || ||||| ||| | | | |||
Sbjct 830 CCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTGGTATCGAGCTGAACTGG 771
Query 21416 GGATTCCCTGCTGATACCTCAGACACATTAAGCACAGAGCTGCAATACAGCGTTACGGCT 21475
|| ||||| || | ||| ||||| | | || || | || |||||| | || | |
Sbjct 770 GGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTCAGTACAGCCTGACCGGT 711
Query 21476 GACGGTTCAAATCCTATTTTGTTGGCGTCTGTACCTTATCCTCTA---AAACTTTATCAG 21532
|| || | || || || | ||||||||| || | ||| ||||||
Sbjct 710 ACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGCAGCGCAAA---TATCAG 654
Query 21533 CAGATGGGCCTTAAGGCCGGTCAGGAATTCTGGTACCGCGCACAGCTGGTTGACCGAACC 21592
|||||||||||||| || || |||| |||||||||||||| |||||||| |||||||||
Sbjct 653 CAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGCTGGTGGACCGAACC 594
Query 21593 GGTAACGAATCAGGATACACAGAATGGGTTCGTGGGCAGGCAAGTATAGATGTTTCTGAT 21652
|| || ||||| || ||||| |||| || ||||| ||||| || | ||||| || |||
Sbjct 593 GGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCGTTGATGTATCGGAT 534
Query 21653 GTCTCCAGTGTGATTTTGGAGGACATGAAGGAATCTCAGACG--TTCAAAGACCTGATCG 21710
|| | || ||| |||||||||| || || |||||| | ||||| ||||||||||
Sbjct 533 ATCACAGATGCAATTCTGGAGGACATTAA--AACCTCAGAAGTCTTCAAGGACCTGATCG 476
Query 21711 AGAGCGCAGTGGACAGCAATGCAAAAATTGCTGGCATGGCTGATG 21755
|| || |||| ||||| || ||| | |||| || ||||||
Sbjct 475 AGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATG 431
>seq14394
Length=813
Score = 125 bits (138), Expect = 2e-24
Identities = 309/456 (68%), Gaps = 16/456 (4%)
Strand=Plus/Plus
Query 25331 ATAGATCTACACCTCCTTTAA-TAGTACTGTATGTATAAACAGTG-CTAAAG-AGGTGCA 25387
|| |||| ||||| || | | || |||||||| ||| ||||| ||| | ||||| |
Sbjct 32 ATTGATCGACACCGCCGATCAGTACTACTGTATTAATATACAGTAACTATCGGAGGTG-A 90
Query 25388 GAACATGGGATTCCCATCTCCAGCAGCAGACTATGTTGAAGATCGCATATCGCTCGACAA 25447
| ||||||||||| ||| ||| |||||| || ||||| ||||||||||| |||||
Sbjct 91 GTT-ATGGGATTCCCGAGTCCGGCACAAGACTACGTAGAAGAGCGCATATCGCTAGACAA 149
Query 25448 ACGGCTTATCGCGCA-TCCGGCAGCCACGTACATGATGATAGCGGGCTCTACATACCTGC 25506
|| | || ||| || || || |||||| | || | ||| || | || || |
Sbjct 150 GCGCATCAT-AAGCAGACCAGCGGCTACGTACTTTATTAGAGCTGGTGCGACGCACTATC 208
Query 25507 GAGCTGGCATAATGAAGGGCGCAATGCTTATCGTCGACTCGTCGCTGACACCAAAAGACG 25566
| | ||||| ||||| ||||| |||| | ||||| |||| |||| || || |
Sbjct 209 GTGAAGGCATCATGAACGGCGCTCTGCTGGTAGTCGATGCGTCACTGAATCCGTGTGATG 268
Query 25567 GTTCTCTTCTGGTGTGCGCTATAGACGGTGAGTTCAGGATTATGCGTTACAGGACGCATC 25626
| || | ||||| ||| || || || ||| | ||||| | ||| || | | |||||
Sbjct 269 GCTCATTGCTGGTATGCAGGATGGAAGGCGAGCTGAGGATAAAGCGCTATCGTAAGCATC 328
Query 25627 CGCAGCCTTGTCTGGAAAACCCTGAAAATGGAAGGAGGGAGTCGTTACC-GTTGAAAGAC 25685
| ||||| || ||| | | | ||| ||| | || | |||| ||| ||
Sbjct 329 CACAGCCACACCTTGAAGATTTGCAGACTGGCAGGCGAGAAGAGATACCAGTT----CAC 384
Query 25686 GATGTGTCGGATACATCGCGG--CCGGTGTTTGGGGTGATCACCTACAGCATCAACGATG 25743
|| || |||| | | ||| | | |||||||||||||| ||| |||||||||||
Sbjct 385 GA--TGACGGAACGAGCCCGGATGCTATCTTTGGGGTGATCACATACTGCATCAACGATA 442
Query 25744 CGCGTTCTGGTGAGTTCGACGACTGCCCGGTGATGT 25779
| | | |||||||| ||||| |||||||| ||||
Sbjct 443 TGAGGGCGGGTGAGTTTGACGATTGCCCGGTTATGT 478
Score = 80.6 bits (88), Expect = 8e-11
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTA 26010
||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 605 CTTCTAAGCCGTATGTCGTACGTTCGAATCCTACAGGGCGTGCCATTTA 653
>seq2024
Length=8047
Score = 86.0 bits (94), Expect = 2e-12
Identities = 47/47 (100%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 26008
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7791 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATT 7745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158476562527300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |