Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq35 147 3e-30 seq1042 111 2e-19 >seq35 Length=1961283 Score = 147 bits (162), Expect = 3e-30 Identities = 177/240 (74%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 37189 AATGTAAACCT---TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTA 37245 ||||| ||| | |||||||| |||| ||||| ||| ||||| |||||||||| Sbjct 1197144 AATGTTAACATACCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTA 1197085 Query 37246 AACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAA 37305 | |||||||| || | |||||||| ||| |||||| |||||| || || |||||||||| Sbjct 1197084 ATCCTCTTTTCTTCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAA 1197025 Query 37306 CTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttt 37365 |||| |||||||| || | | | ||| ||||||| || |||| |||||||| Sbjct 1197024 CTGCAGCAAATGCAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAA 1196965 Query 37366 ttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 | |||||||||||| ||| ||||| || |||||||| || || || | ||||| Sbjct 1196964 GAGCCCAATCTGCCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||| || ||||||| ||| ||||||||||| || || |||||||| || ||| || Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||||||||| ||||| |||| || |||||| || | | | || || | | | | Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||| ||| ||||| || || | || | |||||| || Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGA 1196646 Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663 | ||||||| | ||||| ||||||| | || ||| Sbjct 1196645 CGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608 >seq1042 Length=111944 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | ||||| ||||| |||| ||| ||||||||||| || || ||||| || || | Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA 37559 || || || ||||||||||| ||||| |||| || |||||| || | | |||| | ||| Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646 Query 37560 GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATA 37619 | | |||||| ||||||| |||| ||| || || || || || | || |||| Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706 Query 37620 AAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663 || || | || |||| | | | | ||||||| | || ||| Sbjct 80707 AAGTGACGCTCTTCATCAGTCATTCTCATCCAATCTTCAAGATC 80750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592139660257000