Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq35 147 3e-30
seq1042 111 2e-19
>seq35
Length=1961283
Score = 147 bits (162), Expect = 3e-30
Identities = 177/240 (74%), Gaps = 3/240 (1%)
Strand=Plus/Minus
Query 37189 AATGTAAACCT---TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTA 37245
||||| ||| | |||||||| |||| ||||| ||| ||||| ||||||||||
Sbjct 1197144 AATGTTAACATACCTCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTA 1197085
Query 37246 AACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAA 37305
| |||||||| || | |||||||| ||| |||||| |||||| || || ||||||||||
Sbjct 1197084 ATCCTCTTTTCTTCAACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAA 1197025
Query 37306 CTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttt 37365
|||| |||||||| || | | | ||| ||||||| || |||| ||||||||
Sbjct 1197024 CTGCAGCAAATGCAACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAA 1196965
Query 37366 ttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425
| |||||||||||| ||| ||||| || |||||||| || || || | |||||
Sbjct 1196964 GAGCCCAATCTGCCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 1196905
Score = 123 bits (136), Expect = 3e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505
||||| || ||||||| ||| ||||||||||| || || |||||||| || ||| ||
Sbjct 1196825 ATATATGTGTCAATTAATAAGCTATACATTTCTGAATGTATATTTTCCATCATTATTTGG 1196766
Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565
|| ||||||||||| ||||| |||| || |||||| || | | | || || | | | |
Sbjct 1196765 AACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAGAATCTTTCAACAAGA 1196706
Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625
|||||||| || || ||||| ||| ||||| || || | || | |||||| ||
Sbjct 1196705 TTTTCATTGACAATGCCATCTGAAGCAGCAAAAAATGCTAATACGTGAGATATAAAGTGA 1196646
Query 37626 CTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663
| ||||||| | ||||| ||||||| | || |||
Sbjct 1196645 CGCTCATCATCAGTCAATTTCATCCAATCTTCAAGATC 1196608
>seq1042
Length=111944
Score = 111 bits (122), Expect = 2e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499
||| | ||||| ||||| |||| ||| ||||||||||| || || ||||| || || |
Sbjct 80527 TCTTTAATATATGTATCTATTAATAAGCTATACATTTCTGAATGTATATTCTCTATCATT 80586
Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA 37559
|| || || ||||||||||| ||||| |||| || |||||| || | | |||| | |||
Sbjct 80587 ATTTGGAACCCATAAAAACATCTAGCCTCAGTTACTTGAACTTCTTGAGAAAATCGTTTA 80646
Query 37560 GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATA 37619
| | |||||| ||||||| |||| ||| || || || || || | || ||||
Sbjct 80647 ACAAGATTTTCACTAACTATGCCATTTGAAGCAGCTAAAAATGCTAGTATGTAGGATATA 80706
Query 37620 AAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATC 37663
|| || | || |||| | | | | ||||||| | || |||
Sbjct 80707 AAGTGACGCTCTTCATCAGTCATTCTCATCCAATCTTCAAGATC 80750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592139660257000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |