Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq2959 288 3e-73 seq14394 140 8e-29 >seq2959 Length=4395 Score = 288 bits (318), Expect = 3e-73 Identities = 461/649 (71%), Gaps = 20/649 (3%) Strand=Plus/Minus Query 14532 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 14591 |||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | | Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051 Query 14592 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGTATGGACGATGA 14651 ||| || ||||||| |||| || | ||||| || || ||| |||||||| || Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991 Query 14652 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGATCTGGATGTGTGGGT 14708 ||| ||||| | ||| | || ||| ||| ||||| | |||| || || ||| | Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934 Query 14709 AGTTGACGC-ATCGCGTTTATCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 14767 || ||||| | | | | | | || || | ||| | |||| ||||||| ||||||| Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875 Query 14768 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 14827 | | || || || || || | | |||||| ||||| || ||||| || |||| Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815 Query 14828 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 14886 | || || || || ||||| || || || || |||||||| |||||||| ||| ||||| Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756 Query 14887 AAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGG 14946 ||||| || ||||| || ||||| || | || ||||| |||||||||||||| ||||| Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696 Query 14947 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 15000 || || ||||| ||||| ||||| ||| |||| || || ||||||||||| ||| Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636 Query 15001 GACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 15058 ||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | | Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--G 578 Query 15059 CCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 15118 | ||| || || ||||||||||| || |||||||| || || ||| || || || | Sbjct 577 CTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518 Query 15119 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGACGAAGC 15167 ||||| ||| ||||| || ||| || |||||||| ||||| Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 >seq14394 Length=813 Score = 140 bits (154), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 5/162 (3%) Strand=Plus/Plus Query 2900 TGGGACAAAAACGGGACACACAAAGCTTTGCATCGGCTTGCAAGGCTTTGCATGTTTTTC 2959 || |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 478 TGAGACAGAAATGGGACACACAAAGCTTTGCATCGGTTTGCAAGGCTTTGCATGTTTTTC 537 Query 2960 GAAGATGGGACGTGTGAGCGCAGGTATGACGCGGTATG-TTGTTGACTTA--AAAGGTAG 3016 ||||||||||||||||||||| ||| | |||| | |||||| ||| |||||| Sbjct 538 GAAGATGGGACGTGTGAGCGCCTTAGTGATGGGGTAAGTTTGTTG--TTAGCTCAGGTAG 595 Query 3017 TTCTTATAATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTA 3058 ||| || | ||| || | |||||| |||||| ||||| Sbjct 596 TTCCAGGAACTTCTAAGCCGTATGTCGTACGTTCGAATCCTA 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128251552176500