Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_017985.1
Length=40128
Score E
Sequences producing significant alignments: (Bits) Value
seq2959 288 3e-73
seq14394 140 8e-29
>seq2959
Length=4395
Score = 288 bits (318), Expect = 3e-73
Identities = 461/649 (71%), Gaps = 20/649 (3%)
Strand=Plus/Minus
Query 14532 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 14591
|||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | |
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051
Query 14592 TGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCGTCACGTATGGACGATGA 14651
||| || ||||||| |||| || | ||||| || || ||| |||||||| ||
Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991
Query 14652 AGGATGGGCGAGAGTTGCAAGCGGGATG--AAG-TTGCTGGCAGATCTGGATGTGTGGGT 14708
||| ||||| | ||| | || ||| ||| ||||| | |||| || || ||| |
Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934
Query 14709 AGTTGACGC-ATCGCGTTTATCTGTCGAAGAAATCAGGTCCATTTCCGAACGCCACAAGC 14767
|| ||||| | | | | | | || || | ||| | |||| ||||||| |||||||
Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875
Query 14768 AGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 14827
| | || || || || || | | |||||| ||||| || ||||| || ||||
Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815
Query 14828 AAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAGCCTGAAAGCG-ATGGCG 14886
| || || || || ||||| || || || || |||||||| |||||||| ||| |||||
Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756
Query 14887 AAAGACCTGAAAACTCCAGTTATCTCATTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGG 14946
||||| || ||||| || ||||| || | || ||||| |||||||||||||| |||||
Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696
Query 14947 CCAAA---CAAGCGC---CCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 15000
|| || ||||| ||||| ||||| ||| |||| || || ||||||||||| |||
Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636
Query 15001 GACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 15058
||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | |
Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--G 578
Query 15059 CCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 15118
| ||| || || ||||||||||| || |||||||| || || ||| || || || |
Sbjct 577 CTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518
Query 15119 ACCAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGACGAAGC 15167
||||| ||| ||||| || ||| || |||||||| |||||
Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
>seq14394
Length=813
Score = 140 bits (154), Expect = 8e-29
Identities = 130/162 (80%), Gaps = 5/162 (3%)
Strand=Plus/Plus
Query 2900 TGGGACAAAAACGGGACACACAAAGCTTTGCATCGGCTTGCAAGGCTTTGCATGTTTTTC 2959
|| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TGAGACAGAAATGGGACACACAAAGCTTTGCATCGGTTTGCAAGGCTTTGCATGTTTTTC 537
Query 2960 GAAGATGGGACGTGTGAGCGCAGGTATGACGCGGTATG-TTGTTGACTTA--AAAGGTAG 3016
||||||||||||||||||||| ||| | |||| | |||||| ||| ||||||
Sbjct 538 GAAGATGGGACGTGTGAGCGCCTTAGTGATGGGGTAAGTTTGTTG--TTAGCTCAGGTAG 595
Query 3017 TTCTTATAATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTA 3058
||| || | ||| || | |||||| |||||| |||||
Sbjct 596 TTCCAGGAACTTCTAAGCCGTATGTCGTACGTTCGAATCCTA 637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128251552176500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |