Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq2959 313 6e-81 >seq2959 Length=4395 Score = 313 bits (346), Expect = 6e-81 Identities = 453/626 (72%), Gaps = 20/626 (3%) Strand=Plus/Minus Query 31999 GCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAGGTTGTTGAGAGAGGGAT 32058 |||||| ||| |||||||| ||||||||| ||| | |||| |||| ||| | | | Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGCT 1051 Query 32059 TGCCGGCGCAGGAATGATGTCGGTGAGTGTGCTGCGTAACCCATCACGTATGGACGATGA 32118 ||| || ||||||| |||| ||| | ||||| || ||| ||| |||||||| || Sbjct 1050 TGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACGA 991 Query 32119 AGGATGGGCGAGAGTTGCAAGTGGGATG--AAG-TTGCTGGCAGATCTAGATGTGTGGGT 32175 ||| ||||| | ||| | ||| ||| ||| ||||| | |||| || || ||| | Sbjct 990 AGGCTGGGCAAAAGTCACCGCTGGAATGGGAAGATTGCTTG---ATCTCGACGTATGGAT 934 Query 32176 AGTTGACGCGT-CACGTTTGTCTGTCGAAGAAATCAGGTCCATCGCCGAACGCCACAAGC 32234 || ||||| || | | | || || | ||| | ||||||||||||| ||||||| Sbjct 933 TGTGGACGCCAGCAAGATGAAC-GTGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGC 875 Query 32235 AGGAGCACCCGAATCTGTCACTGATTATGGCTGACTATCTCGGGCTAATTGAGAAACCAA 32294 | ||||| || || || || | | |||||| ||||| || ||||| || |||| Sbjct 874 GCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAA 815 Query 32295 AAGCGGAACGTAATGACCTCGCAATTGCTCACATCTCCGGTAGCCTGAAAGCG-ATGGCG 32353 | || || || || ||||| || || || ||||||||||| |||||||| ||| ||||| Sbjct 814 AGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAA-GCGCATGGCA 756 Query 32354 AAAGACCTGAAAACTCCTGTTATCTCCCTAAGCCAGCTCTCCCGCGATGTTGAGAAGCGA 32413 ||||| || ||||| |||||||| || || || ||||| |||||||||||||| ||||| Sbjct 755 AAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGC 696 Query 32414 CCAA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAG 32467 || | ||| || ||||| ||||| ||| |||| || || ||||||||||| ||| Sbjct 695 CCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAG 636 Query 32468 GATGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGCG 32525 || || ||| |||||||||||||| || ||||| || ||||||| |||| | ||| Sbjct 635 GACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCAGCT 576 Query 32526 CCGCACCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTTT 32585 || | || || ||||||||||| || |||||||| || || ||| || || || | Sbjct 575 GCGAA--GTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCT 518 Query 32586 ACCAGCGGTTCTGCAACGGACACTTT 32611 ||||| ||| ||||| || ||| Sbjct 517 ACCAGGCTTTCAATAACGGGCATTTT 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127147865833250