Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1477 286 1e-72 seq2440 150 6e-32 seq2622 98.7 3e-16 >seq1477 Length=14545 Score = 286 bits (316), Expect = 1e-72 Identities = 559/818 (68%), Gaps = 11/818 (1%) Strand=Plus/Plus Query 25107 AAGCTGGCTAA-CCATGCTGCGAAAAAGTGG-CAGCGCCAGACCGGCGGGGTGGTTGACT 25164 ||||||||||| ||||||||| ||||| ||| || |||| ||||| || |||| Sbjct 13419 AAGCTGGCTAAACCATGCTGCCAAAAAATGGTCAA----AGACAGGCGGTGTACTTGATC 13474 Query 25165 TGTCGAACATTGACCGCCAGCGTCGGCTGCTGGCACTGATACCCGTAGAGGATGTGTGGG 25224 |||| ||||| || || || || |||| ||| | || ||||| || || |||| Sbjct 13475 TGTCTAACATCGATCGACAAAAGAAACTTATGGCGCTGGTGCCGGTAGAAGACGTTTGGG 13534 Query 25225 GTGTCGGTAGGCGTATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATC 25284 | || || |||| |||||||||||||| ||||| ||||| |||| ||||| || | Sbjct 13535 GCGTTGGCCGGCGAATCAGCAAGAAGCTGAATGCTATGGGCATCATTACGGCCAAAGACC 13594 Query 25285 TCTCAGAGCAAAGCACCTGGATTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGG 25344 | || ||||| || || | || |||||||||||||| |||||||| || || |||| | Sbjct 13595 TGTCTGAGCAGAGTACTTATATCATCCGCAAGCACTTCAATGTGGTGCTTGAGAGAACTG 13654 Query 25345 TCCGGGAGCTGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGG 25404 | || ||| |||||||||| | ||| || || | |||||||| |||||| | |||||| Sbjct 13655 TGCGCGAGTTGCGTGGCGAGCAATGCCTTGAGATAGAGGAGTTCGCGCCGACCAAGCAGC 13714 Query 25405 AAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGG 25464 | || ||||| ||||||||| || |||| |||| || ||| | |||||||||| Sbjct 13715 AGATAGTCTGTTCCCGGTCATTTGGTTCACGCATTACTGAGTACATGGAAATGCGCCAGG 13774 Query 25465 CTATCTGCAGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCC 25524 | ||||| |||||| | |||| ||||| || |||| || || | |||| |||| Sbjct 13775 CCATCTGTGCTTATGCGGAGCGTGCCGCTGAGAAGTTACGCGGCGAACGTCAGTTCTGCC 13834 Query 25525 GTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCA 25584 | | ||| |||||| || ||| || || || |||||||| | Sbjct 13835 GACAGGTAGCGGTATTCGTCCGAACCAGCCCGCATGCAGAAAATGAAATCTATTACGGTA 13894 Query 25585 ATTGCGCGTCAGTGAAGCTTCTCACACCCACGCATGATTCCCGCGACATCATCAACGCTG 25644 || ||| | || | | || || | |||| |||||||||||||| | || Sbjct 13895 ATCAGGCGATGGGTAATTTGATGACTCCATCCAATGACACCCGCGACATCATCCGGGTTG 13954 Query 25645 TTGT-TAAGTGCCTGGACAAAATCTGGCAGGATGGGCACCGCTACCAAAAGGCTGGCATT 25703 | || || ||||| ||||||| ||| | ||||| || || || || Sbjct 13955 CCATGGAAATG-CTGGATCGCATCTGGCTCGATAATCGGCGCTATATGAAAGCAGGGGTT 14013 Query 25704 ATGCTCGGGGATTTCTTTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCC 25763 ||||| || |||||||| || ||||| || |||| || || || || || || | Sbjct 14014 ATGCTTGGCGATTTCTTCAGTCAGGGGGTGTCACAACTCAATCTTTTCGACGAACACAAA 14073 Query 25764 CCACGTGCTGGCAGCGAGAAGCTGATGGAGGTGCTGGATCAACTCAACGCCAAAGGCGGG 25823 |||| ||| |||||| ||||||| || | ||| || || ||| | ||||| Sbjct 14074 CCACAGGCTAATAGCGAGGCGCTGATGCGCGTTGTAGATGGCCTTAA--CCAGA-GCGGG 14130 Query 25824 AAGGGGACGCTGTACTTCGCCGGGGAGGGCATTCAGCAACAGTGGGCGATGAAGAGAGAA 25883 ||||||| || | ||||| || |||||| |||| || |||||| |||||| | ||| Sbjct 14131 AAGGGGAAACTATGGTTCGCAGGACAGGGCACTCAGAAAGCGTGGGCAATGAAGCGGGAA 14190 Query 25884 ATGCTTTCGCCTCGGTACACTACTAGGTACTCTGATCT 25921 ||| | || || |||||| ||| | || || ||||| Sbjct 14191 ATGTTGTCTCCGGCGTACACCACTCGTTATTCGGATCT 14228 >seq2440 Length=3976 Score = 150 bits (166), Expect = 6e-32 Identities = 259/367 (71%), Gaps = 17/367 (5%) Strand=Plus/Minus Query 28849 CTTACCGGAATCTGCGTTTCGTTCCACTTGAAAATGAGAACACCGTGTGGCCGCAATACG 28908 || ||||| ||||||||||||||||| || ||||| || ||||||||||||| || Sbjct 1276 CTCACCGGGATCTGCGTTTCGTTCCATTTAAAAATCAGCGTGCCGTGTGGCCGCAGCACC 1217 Query 28909 CGGAATGCCTCTTTGAATCCGGCGCGGAGGTCAGAACGCCATGT-TTTTTATTCAG-GCG 28966 | ||||||||| ||| || ||||||| ||| ||||| || ||||| | ||| ||| Sbjct 1216 CTGAATGCCTCAGCGAACCCAGCGCGGATATCATCGCGCCACGTCTTTTTGTCCAGCGCG 1157 Query 28967 TCCGTATTTTTTACCCATCCAGGCGTTATCACCAACTCGCTCAAGATGCGGAGGGTCAAA 29026 || ||||| || | ||||||| | || ||||| | || || || ||||| || || || Sbjct 1156 -CCATATTTCTTGCGCATCCAGCCATTTTCACCGGCGCGGTCGAGGTGCGGCGGATCGAA 1098 Query 29027 CACCACAACCGGAAAAGAAGAATCA---GCGAACGGCAGTGAACGAAAGTCGGCAATGAG 29083 ||||| | || || || ||| |||||||||| | || || || ||||| | Sbjct 1097 TACCAC--CTGGGCAA-AATGTTCACTGGCGAACGGCAAAGCGCGGAAATCAGCAATAAC 1041 Query 29084 GTCAGGACTGATAACCAGGCTGCGACCG----TCGCACAATATATGCTCCTCGTCGCGGA 29139 || || | |||| || ||| ||| || || | | || ||| | ||||| Sbjct 1040 ATCCGGGCAGATATGCA--ATGC--CCGGTTATCACATAGCGTGTGGGACTCTTTGCGGA 985 Query 29140 TATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAACCAGAACATGCGCGAGCCGCAGC 29199 |||| || ||||| || || |||| || || | |||||||||||| || ||||||| Sbjct 984 TATCAGCAAATACAGCTCGCGGATCGGTTTTGTTGAGCCAGAACATGCGTGAACCGCAGC 925 Query 29200 ACATATC 29206 ||||||| Sbjct 924 ACATATC 918 >seq2622 Length=4053 Score = 98.7 bits (108), Expect = 3e-16 Identities = 445/689 (65%), Gaps = 30/689 (4%) Strand=Plus/Plus Query 24310 GTACCGTGTGGCTTCCCAAGTC-CCGCGGCAG-ACTACATTGAGCAGCGTATCGATCTTA 24367 || ||||| || || || ||| ||| |||| | ||| ||||||||||||| || || | Sbjct 179 GTGCCGTGCGGTTTTCC--GTCACCGGCGCAGGATTACGTTGAGCAGCGTATTGACCTCA 236 Query 24368 ATGAGTTGCTCGTTTCTCATCCCAGCTCAACGTATTTTGTCAAAGCAACGGGTGATTCAA 24427 |||| | ||| | ||||||||| | || || || |||||| | ||||| || | Sbjct 237 ATGATCTCTGCGTCACGCATCCCAGCGCCACTTACTTCATCAAAGTCAGCGGTGACTCGA 296 Query 24428 TGATTGATGCAGGCATCAACGACGGTGATCTGCTGGTGGTGGATA--GCTCACGAACTGC 24485 ||||||| | || |||| || || ||| ||||| | || |||| ||| |||| | Sbjct 297 TGATTGAGGGCGGAATCAGTGATGGCGATATGCTGATCGTCGATAGTGCTGTAGAAC--C 354 Query 24486 TGAACACGGCGATATTGTTATTGCAGCCGTGGATGGGGAGTTTACTGTTAAACGCCTGCA 24545 || || || ||| | || | || || | | ||||| || || || || | ||| Sbjct 355 CGAGCAGGGTGATGTGGTGGTGGCTGCTATCGCGGGGGAATTCACGGTGAAGCAGCTGAT 414 Query 24546 GCTGCGACCTACAGTTCAGCTCAATCCGATGAA--CAGCGCTTATTCGCCGATCAT---C 24600 |||| ||| | || ||||| |||||||| | |||| |||| ||||| | Sbjct 415 GCTGAAGCCTTGCTTGCACCTCAAACCGATGAATGCGGCGC----ACGCC-ATCATTCCC 469 Query 24601 GTCGGCAGCGAAGACACGCTGGACGTATTCGGCGTCGTTA---CTTTCATCGTTAAAACA 24657 | | | || | | || | ||||| ||||||| | ||||| || || Sbjct 470 ATTCCCGACCCGGATCAGTTTGAGATTTTCGGTGTCGTTAAACATGTCATC---AAGACG 526 Query 24658 GCGAGCTGAGTATGTTCGCACTTTGCGATGTTAATTCGTTTTACGCCAGTTGTGAAACTG 24717 ||| | ||||| || || ||||| || || || || ||| ||||| || | Sbjct 527 CTGAGACGGTAATGTTTGCGCTGGTGGATGTGAACTCATTCTATGCCTCGTGTGAGACGG 586 Query 24718 TATTCAGACCAGATTTGAGAGGGCGCCCGGTTGTCGTACTGTCGAACAATGATGGTTGTG 24777 ||||||| || ||| | | ||| ||||| | || | ||||| ||||| || | Sbjct 587 TATTCAGGCCGGATCTCAAAGGCAAGCCGGTGATTGTGTTAAGCAACAACGATGGCTGCG 646 Query 24778 TGATTGCGCG-CAGCACCGAGGCGAAGCAACTCGGTATCGCAATGGGTGAGCCATACTTC 24836 | || || || | ||||||| ||| | || | ||||| ||||| | || || ||| Sbjct 647 TCATCGCACGTTCGGGCCGAGGCCAAGAAGCTGGATATCGGCATGGGCGGCCCCTATTTC 706 Query 24837 AAACAGAAAGAACGCTTCC--AGCAATTTGGTGTTGTTTGCTTCAGCAGTAATTATGAGC 24894 ||| ||||| || | || || ||| | || |||||| ||| |||| || Sbjct 707 AAAATCAAAGATGTGTTGCGTCGCCATAACGTG-CATGTG-TTCAGCTCTAACTATGCGC 764 Query 24895 TTTACGCTGATATGTCGAACCGGGTAATGACCACACTCGAGGAGATGTC-GCCGCGGGTA 24953 | ||||| |||||| || || ||||| | ||| || |||||| | |||| | | Sbjct 765 TCTACGCCGATATGAGTCTGCGCGTGATGACGATACTGGAAGAGATGGCACCCGCCGTTG 824 Query 24954 GAAATTTACAGCATTGATGAGGCTTTTTG 24982 || || ||| ||| |||||| ||| || Sbjct 825 GAGATCTACTCCATCGATGAGCGTTTATG 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157004980736300