Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq1477 286 1e-72
seq2440 150 6e-32
seq2622 98.7 3e-16
>seq1477
Length=14545
Score = 286 bits (316), Expect = 1e-72
Identities = 559/818 (68%), Gaps = 11/818 (1%)
Strand=Plus/Plus
Query 25107 AAGCTGGCTAA-CCATGCTGCGAAAAAGTGG-CAGCGCCAGACCGGCGGGGTGGTTGACT 25164
||||||||||| ||||||||| ||||| ||| || |||| ||||| || ||||
Sbjct 13419 AAGCTGGCTAAACCATGCTGCCAAAAAATGGTCAA----AGACAGGCGGTGTACTTGATC 13474
Query 25165 TGTCGAACATTGACCGCCAGCGTCGGCTGCTGGCACTGATACCCGTAGAGGATGTGTGGG 25224
|||| ||||| || || || || |||| ||| | || ||||| || || ||||
Sbjct 13475 TGTCTAACATCGATCGACAAAAGAAACTTATGGCGCTGGTGCCGGTAGAAGACGTTTGGG 13534
Query 25225 GTGTCGGTAGGCGTATCAGCAAGAAGCTCAATGCCATGGGAATCAAAACGGCTCTGGATC 25284
| || || |||| |||||||||||||| ||||| ||||| |||| ||||| || |
Sbjct 13535 GCGTTGGCCGGCGAATCAGCAAGAAGCTGAATGCTATGGGCATCATTACGGCCAAAGACC 13594
Query 25285 TCTCAGAGCAAAGCACCTGGATTATCCGCAAGCACTTTAATGTGGTACTGGAACGAACGG 25344
| || ||||| || || | || |||||||||||||| |||||||| || || |||| |
Sbjct 13595 TGTCTGAGCAGAGTACTTATATCATCCGCAAGCACTTCAATGTGGTGCTTGAGAGAACTG 13654
Query 25345 TCCGGGAGCTGCGTGGCGAACCATGTCTGGATCTGGAGGAGTTTGCGCCGGCAAAGCAGG 25404
| || ||| |||||||||| | ||| || || | |||||||| |||||| | ||||||
Sbjct 13655 TGCGCGAGTTGCGTGGCGAGCAATGCCTTGAGATAGAGGAGTTCGCGCCGACCAAGCAGC 13714
Query 25405 AAATCGTCTGCAGCCGGTCATTCGGAGAACGCGTTACCGAATACGAACAGATGCGCCAGG 25464
| || ||||| ||||||||| || |||| |||| || ||| | ||||||||||
Sbjct 13715 AGATAGTCTGTTCCCGGTCATTTGGTTCACGCATTACTGAGTACATGGAAATGCGCCAGG 13774
Query 25465 CTATCTGCAGTTATGCTGCCCGTGGTGCTGAAAAACTACGTGGTGAGCACCAGTATTGCC 25524
| ||||| |||||| | |||| ||||| || |||| || || | |||| ||||
Sbjct 13775 CCATCTGTGCTTATGCGGAGCGTGCCGCTGAGAAGTTACGCGGCGAACGTCAGTTCTGCC 13834
Query 25525 GTTTTATCTCGGCGTTCGTCAAGACGTCACCGTTCGCGCTTAACGAGCCGTATTACGGCA 25584
| | ||| |||||| || ||| || || || |||||||| |
Sbjct 13835 GACAGGTAGCGGTATTCGTCCGAACCAGCCCGCATGCAGAAAATGAAATCTATTACGGTA 13894
Query 25585 ATTGCGCGTCAGTGAAGCTTCTCACACCCACGCATGATTCCCGCGACATCATCAACGCTG 25644
|| ||| | || | | || || | |||| |||||||||||||| | ||
Sbjct 13895 ATCAGGCGATGGGTAATTTGATGACTCCATCCAATGACACCCGCGACATCATCCGGGTTG 13954
Query 25645 TTGT-TAAGTGCCTGGACAAAATCTGGCAGGATGGGCACCGCTACCAAAAGGCTGGCATT 25703
| || || ||||| ||||||| ||| | ||||| || || || ||
Sbjct 13955 CCATGGAAATG-CTGGATCGCATCTGGCTCGATAATCGGCGCTATATGAAAGCAGGGGTT 14013
Query 25704 ATGCTCGGGGATTTCTTTAGCCAGGGTGTCGCACAGCTTAACCTGTTTGATGACAATGCC 25763
||||| || |||||||| || ||||| || |||| || || || || || || |
Sbjct 14014 ATGCTTGGCGATTTCTTCAGTCAGGGGGTGTCACAACTCAATCTTTTCGACGAACACAAA 14073
Query 25764 CCACGTGCTGGCAGCGAGAAGCTGATGGAGGTGCTGGATCAACTCAACGCCAAAGGCGGG 25823
|||| ||| |||||| ||||||| || | ||| || || ||| | |||||
Sbjct 14074 CCACAGGCTAATAGCGAGGCGCTGATGCGCGTTGTAGATGGCCTTAA--CCAGA-GCGGG 14130
Query 25824 AAGGGGACGCTGTACTTCGCCGGGGAGGGCATTCAGCAACAGTGGGCGATGAAGAGAGAA 25883
||||||| || | ||||| || |||||| |||| || |||||| |||||| | |||
Sbjct 14131 AAGGGGAAACTATGGTTCGCAGGACAGGGCACTCAGAAAGCGTGGGCAATGAAGCGGGAA 14190
Query 25884 ATGCTTTCGCCTCGGTACACTACTAGGTACTCTGATCT 25921
||| | || || |||||| ||| | || || |||||
Sbjct 14191 ATGTTGTCTCCGGCGTACACCACTCGTTATTCGGATCT 14228
>seq2440
Length=3976
Score = 150 bits (166), Expect = 6e-32
Identities = 259/367 (71%), Gaps = 17/367 (5%)
Strand=Plus/Minus
Query 28849 CTTACCGGAATCTGCGTTTCGTTCCACTTGAAAATGAGAACACCGTGTGGCCGCAATACG 28908
|| ||||| ||||||||||||||||| || ||||| || ||||||||||||| ||
Sbjct 1276 CTCACCGGGATCTGCGTTTCGTTCCATTTAAAAATCAGCGTGCCGTGTGGCCGCAGCACC 1217
Query 28909 CGGAATGCCTCTTTGAATCCGGCGCGGAGGTCAGAACGCCATGT-TTTTTATTCAG-GCG 28966
| ||||||||| ||| || ||||||| ||| ||||| || ||||| | ||| |||
Sbjct 1216 CTGAATGCCTCAGCGAACCCAGCGCGGATATCATCGCGCCACGTCTTTTTGTCCAGCGCG 1157
Query 28967 TCCGTATTTTTTACCCATCCAGGCGTTATCACCAACTCGCTCAAGATGCGGAGGGTCAAA 29026
|| ||||| || | ||||||| | || ||||| | || || || ||||| || || ||
Sbjct 1156 -CCATATTTCTTGCGCATCCAGCCATTTTCACCGGCGCGGTCGAGGTGCGGCGGATCGAA 1098
Query 29027 CACCACAACCGGAAAAGAAGAATCA---GCGAACGGCAGTGAACGAAAGTCGGCAATGAG 29083
||||| | || || || ||| |||||||||| | || || || ||||| |
Sbjct 1097 TACCAC--CTGGGCAA-AATGTTCACTGGCGAACGGCAAAGCGCGGAAATCAGCAATAAC 1041
Query 29084 GTCAGGACTGATAACCAGGCTGCGACCG----TCGCACAATATATGCTCCTCGTCGCGGA 29139
|| || | |||| || ||| ||| || || | | || ||| | |||||
Sbjct 1040 ATCCGGGCAGATATGCA--ATGC--CCGGTTATCACATAGCGTGTGGGACTCTTTGCGGA 985
Query 29140 TATCGGCGAATACGGCGCGTTCATCGCGCTTATTAAACCAGAACATGCGCGAGCCGCAGC 29199
|||| || ||||| || || |||| || || | |||||||||||| || |||||||
Sbjct 984 TATCAGCAAATACAGCTCGCGGATCGGTTTTGTTGAGCCAGAACATGCGTGAACCGCAGC 925
Query 29200 ACATATC 29206
|||||||
Sbjct 924 ACATATC 918
>seq2622
Length=4053
Score = 98.7 bits (108), Expect = 3e-16
Identities = 445/689 (65%), Gaps = 30/689 (4%)
Strand=Plus/Plus
Query 24310 GTACCGTGTGGCTTCCCAAGTC-CCGCGGCAG-ACTACATTGAGCAGCGTATCGATCTTA 24367
|| ||||| || || || ||| ||| |||| | ||| ||||||||||||| || || |
Sbjct 179 GTGCCGTGCGGTTTTCC--GTCACCGGCGCAGGATTACGTTGAGCAGCGTATTGACCTCA 236
Query 24368 ATGAGTTGCTCGTTTCTCATCCCAGCTCAACGTATTTTGTCAAAGCAACGGGTGATTCAA 24427
|||| | ||| | ||||||||| | || || || |||||| | ||||| || |
Sbjct 237 ATGATCTCTGCGTCACGCATCCCAGCGCCACTTACTTCATCAAAGTCAGCGGTGACTCGA 296
Query 24428 TGATTGATGCAGGCATCAACGACGGTGATCTGCTGGTGGTGGATA--GCTCACGAACTGC 24485
||||||| | || |||| || || ||| ||||| | || |||| ||| |||| |
Sbjct 297 TGATTGAGGGCGGAATCAGTGATGGCGATATGCTGATCGTCGATAGTGCTGTAGAAC--C 354
Query 24486 TGAACACGGCGATATTGTTATTGCAGCCGTGGATGGGGAGTTTACTGTTAAACGCCTGCA 24545
|| || || ||| | || | || || | | ||||| || || || || | |||
Sbjct 355 CGAGCAGGGTGATGTGGTGGTGGCTGCTATCGCGGGGGAATTCACGGTGAAGCAGCTGAT 414
Query 24546 GCTGCGACCTACAGTTCAGCTCAATCCGATGAA--CAGCGCTTATTCGCCGATCAT---C 24600
|||| ||| | || ||||| |||||||| | |||| |||| ||||| |
Sbjct 415 GCTGAAGCCTTGCTTGCACCTCAAACCGATGAATGCGGCGC----ACGCC-ATCATTCCC 469
Query 24601 GTCGGCAGCGAAGACACGCTGGACGTATTCGGCGTCGTTA---CTTTCATCGTTAAAACA 24657
| | | || | | || | ||||| ||||||| | ||||| || ||
Sbjct 470 ATTCCCGACCCGGATCAGTTTGAGATTTTCGGTGTCGTTAAACATGTCATC---AAGACG 526
Query 24658 GCGAGCTGAGTATGTTCGCACTTTGCGATGTTAATTCGTTTTACGCCAGTTGTGAAACTG 24717
||| | ||||| || || ||||| || || || || ||| ||||| || |
Sbjct 527 CTGAGACGGTAATGTTTGCGCTGGTGGATGTGAACTCATTCTATGCCTCGTGTGAGACGG 586
Query 24718 TATTCAGACCAGATTTGAGAGGGCGCCCGGTTGTCGTACTGTCGAACAATGATGGTTGTG 24777
||||||| || ||| | | ||| ||||| | || | ||||| ||||| || |
Sbjct 587 TATTCAGGCCGGATCTCAAAGGCAAGCCGGTGATTGTGTTAAGCAACAACGATGGCTGCG 646
Query 24778 TGATTGCGCG-CAGCACCGAGGCGAAGCAACTCGGTATCGCAATGGGTGAGCCATACTTC 24836
| || || || | ||||||| ||| | || | ||||| ||||| | || || |||
Sbjct 647 TCATCGCACGTTCGGGCCGAGGCCAAGAAGCTGGATATCGGCATGGGCGGCCCCTATTTC 706
Query 24837 AAACAGAAAGAACGCTTCC--AGCAATTTGGTGTTGTTTGCTTCAGCAGTAATTATGAGC 24894
||| ||||| || | || || ||| | || |||||| ||| |||| ||
Sbjct 707 AAAATCAAAGATGTGTTGCGTCGCCATAACGTG-CATGTG-TTCAGCTCTAACTATGCGC 764
Query 24895 TTTACGCTGATATGTCGAACCGGGTAATGACCACACTCGAGGAGATGTC-GCCGCGGGTA 24953
| ||||| |||||| || || ||||| | ||| || |||||| | |||| | |
Sbjct 765 TCTACGCCGATATGAGTCTGCGCGTGATGACGATACTGGAAGAGATGGCACCCGCCGTTG 824
Query 24954 GAAATTTACAGCATTGATGAGGCTTTTTG 24982
|| || ||| ||| |||||| ||| ||
Sbjct 825 GAGATCTACTCCATCGATGAGCGTTTATG 853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157004980736300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |