Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_018281.1 Length=43581 Score E Sequences producing significant alignments: (Bits) Value seq2740 149 2e-31 >seq2740 Length=4841 Score = 149 bits (164), Expect = 2e-31 Identities = 429/651 (66%), Gaps = 22/651 (3%) Strand=Plus/Minus Query 17485 GCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTA 17544 ||||||| || |||||||||| ||| ||| || || | ||||| || ||| Sbjct 4309 GCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTATTCCAAACGGTATAATCGTAACTTTA 4250 Query 17545 GACGGCGATAAGATAATAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGA 17604 || || | | | | |||||| ||| |||||||| |||||||||||||||||||| Sbjct 4249 GATGGGCGTTATACCAGAAAAGCACAAGTTAATGACAAGCCAATTGGCGTTATATCTGGT 4190 Query 17605 ACTGCCGCGTTGGT---AGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAA 17661 || || | | | || || || | | ||||| || ||||| |||||| | ||| Sbjct 4189 ACAGCTGGGGTTGTGTTAGGTGACCAGTTA---TTCCATCATAAAGACAGATTTATAAAA 4133 Query 17662 AACGAATATGGTGTGACTATCAC-GAATAGAAAACAAGTTGAATTTGTAGATGATGAGGG 17720 | |||| || || | || ||| | | || |||||||| ||||| | ||| || Sbjct 4132 GATGAATTCGGAGTTGTGGTAACTGAACA-ACAAGAAGTTGAAATTGTAAAAGATACAGG 4074 Query 17721 CAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAAT 17780 | || | |||| || || || ||| ||| || |||||||| |||| || Sbjct 4073 TGAAGTCGTTAAAGAATTACGAGATATTCCATTAGTTAATCCTGAATACGACGAAAATGA 4014 Query 17781 CGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAAT 17840 |||||| | ||||| || ||||| ||||||||||| || || || |||||||| Sbjct 4013 AGATTATTTGGCGCGTTCTGATAGACCAGAATGGAATGTCGTAGGTTTGACTGGTCAAAT 3954 Query 17841 CTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGT 17900 | ||||| ||||| || |||| | || ||||| || | || ||| | Sbjct 3953 ATTCACAAGAATTGATAACACAGTTAAAGTCAATGATTATATAAAAGCTAATAATGGTAT 3894 Query 17901 AGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGAT---AACTTCTGAATA 17957 ||| |||||||||||||||||| | |||||| ||| | || ||| || | | Sbjct 3893 TGGAACAAAAGATAATGTGAATGGTTACTACAGAGTTATGGAAATCACAACGCCTTACGA 3834 Query 17958 CACTGAAGAACG---TGGCTGTGCAATAGCATTAGT--ATT--GTGGGGTGCTAA---AT 18007 |||||| || | |||| ||| | |||||| | | | || || || | Sbjct 3833 TACTGAAAAAGGATATGGCGTAGCAGTCATATTAGTTAAGTAGGAGGAATGACAATGGAA 3774 Query 18008 AATGGAATTAGAAAAAGTAGGTAAACTTGATTTAAATGAAGAACCATATTTACAACCGAT 18067 |||||||| | | ||| |||| |||||||||| | || || |||||| ||| || Sbjct 3773 AATGGAATCA-ATAAAAAAGGTTTCTTTGATTTAAAAGTTGAGCCTTATTTAAGACCAAT 3715 Query 18068 ATCTAATAGAGGTATCGGTTTTTATAATCTCGATAAAAATACTGCTAAATT 18118 ||| || ||| || |||||||||||| | || ||||||| || | ||| Sbjct 3714 CTCTGATTTAGGGATTGGTTTTTATAATTTAGACGAAAATACAGCAACATT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139298012881550