Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_018281.1
Length=43581
Score E
Sequences producing significant alignments: (Bits) Value
seq2740 149 2e-31
>seq2740
Length=4841
Score = 149 bits (164), Expect = 2e-31
Identities = 429/651 (66%), Gaps = 22/651 (3%)
Strand=Plus/Minus
Query 17485 GCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTA 17544
||||||| || |||||||||| ||| ||| || || | ||||| || |||
Sbjct 4309 GCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTATTCCAAACGGTATAATCGTAACTTTA 4250
Query 17545 GACGGCGATAAGATAATAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGA 17604
|| || | | | | |||||| ||| |||||||| ||||||||||||||||||||
Sbjct 4249 GATGGGCGTTATACCAGAAAAGCACAAGTTAATGACAAGCCAATTGGCGTTATATCTGGT 4190
Query 17605 ACTGCCGCGTTGGT---AGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAA 17661
|| || | | | || || || | | ||||| || ||||| |||||| | |||
Sbjct 4189 ACAGCTGGGGTTGTGTTAGGTGACCAGTTA---TTCCATCATAAAGACAGATTTATAAAA 4133
Query 17662 AACGAATATGGTGTGACTATCAC-GAATAGAAAACAAGTTGAATTTGTAGATGATGAGGG 17720
| |||| || || | || ||| | | || |||||||| ||||| | ||| ||
Sbjct 4132 GATGAATTCGGAGTTGTGGTAACTGAACA-ACAAGAAGTTGAAATTGTAAAAGATACAGG 4074
Query 17721 CAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAAT 17780
| || | |||| || || || ||| ||| || |||||||| |||| ||
Sbjct 4073 TGAAGTCGTTAAAGAATTACGAGATATTCCATTAGTTAATCCTGAATACGACGAAAATGA 4014
Query 17781 CGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAAT 17840
|||||| | ||||| || ||||| ||||||||||| || || || ||||||||
Sbjct 4013 AGATTATTTGGCGCGTTCTGATAGACCAGAATGGAATGTCGTAGGTTTGACTGGTCAAAT 3954
Query 17841 CTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGT 17900
| ||||| ||||| || |||| | || ||||| || | || ||| |
Sbjct 3953 ATTCACAAGAATTGATAACACAGTTAAAGTCAATGATTATATAAAAGCTAATAATGGTAT 3894
Query 17901 AGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGAT---AACTTCTGAATA 17957
||| |||||||||||||||||| | |||||| ||| | || ||| || | |
Sbjct 3893 TGGAACAAAAGATAATGTGAATGGTTACTACAGAGTTATGGAAATCACAACGCCTTACGA 3834
Query 17958 CACTGAAGAACG---TGGCTGTGCAATAGCATTAGT--ATT--GTGGGGTGCTAA---AT 18007
|||||| || | |||| ||| | |||||| | | | || || || |
Sbjct 3833 TACTGAAAAAGGATATGGCGTAGCAGTCATATTAGTTAAGTAGGAGGAATGACAATGGAA 3774
Query 18008 AATGGAATTAGAAAAAGTAGGTAAACTTGATTTAAATGAAGAACCATATTTACAACCGAT 18067
|||||||| | | ||| |||| |||||||||| | || || |||||| ||| ||
Sbjct 3773 AATGGAATCA-ATAAAAAAGGTTTCTTTGATTTAAAAGTTGAGCCTTATTTAAGACCAAT 3715
Query 18068 ATCTAATAGAGGTATCGGTTTTTATAATCTCGATAAAAATACTGCTAAATT 18118
||| || ||| || |||||||||||| | || ||||||| || | |||
Sbjct 3714 CTCTGATTTAGGGATTGGTTTTTATAATTTAGACGAAAATACAGCAACATT 3664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139298012881550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |