Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 109 4e-19
seq276 100 2e-16
seq1265 82.4 6e-11
>seq2302
Length=121279
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||| || || || || ||||| || || ||||| ||||| || | ||
Sbjct 54341 AGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGT 54400
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || ||||| || | |||| || ||
Sbjct 54401 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCT 54460
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||||||| | | || ||||| | ||| || |||| ||
Sbjct 54461 TTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTG 54520
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||||||||| ||||| ||||||||
Sbjct 54521 ATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 54558
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| ||||| || || || | ||
Sbjct 54113 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 54172
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || ||||| || | || | || ||
Sbjct 54173 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCT 54232
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| ||||||| | | || || || | |||||||||| |||
Sbjct 54233 TTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 54292
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || |||||||| || |||||
Sbjct 54293 ATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| ||||| || || || | ||
Sbjct 53885 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53944
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| || ||||| |||| || |||||||| | || | || |||
Sbjct 53945 CCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCC 54004
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | ||| || |||| ||||| |||| |||
Sbjct 54005 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 54064
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || || || ||||||||
Sbjct 54065 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| ||||| || || || | ||
Sbjct 53429 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53488
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || ||||| || | || | || |||
Sbjct 53489 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCC 53548
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | ||| || |||| ||||| |||| |||
Sbjct 53549 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 53608
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || || || || |||||
Sbjct 53609 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| || || ||||| || | ||
Sbjct 52745 AGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGT 52804
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || ||||| || | || | || |||
Sbjct 52805 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCC 52864
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || | |||||||||| |||
Sbjct 52865 TTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 52924
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || || || || |||||
Sbjct 52925 ATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| ||||| || || || | ||
Sbjct 53657 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53716
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || || || || | || | || |||
Sbjct 53717 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 53776
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | ||| || |||| ||||| |||| |||
Sbjct 53777 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 53836
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || || || || |||||
Sbjct 53837 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || ||||||||||| ||||| || || || | ||
Sbjct 53201 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53260
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | ||||| |||||||| |||| || || || || | || | || |||
Sbjct 53261 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 53320
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || | |||||||||| |||
Sbjct 53321 TTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 53380
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| || | || || || || || |||||
Sbjct 53381 ATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
>seq276
Length=376631
Score = 100 bits (110), Expect = 2e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| |||||||| || || |||| | || | || ||||| ||||| ||||||||
Sbjct 240702 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240643
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| | |||||||||||| | || | || || ||||| ||| || ||| |||
Sbjct 240642 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240583
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | ||| ||||| | || || |||| || || |||||||| || | |||||| |||
Sbjct 240582 TCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACA 240523
Query 48756 AAAATCTGCATCGTG 48770
|| || |||||| ||
Sbjct 240522 AAGATTTGCATCTTG 240508
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| |||||||| || ||||||| | || | || ||||| ||||| ||||||||
Sbjct 241158 TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241099
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| | |||||||||||| | || | || || ||||| ||| || ||| |||
Sbjct 241098 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTT 241039
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | ||| ||||||| || || |||| || || ||||| || || | ||||| |||
Sbjct 241038 TCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240979
Query 48756 AAAATCTGCAT 48766
|| || |||||
Sbjct 240978 AAGATTTGCAT 240968
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| |||||||| || || |||| | || | || ||||| ||||| ||||||||
Sbjct 241386 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241327
Query 48636 ATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| | |||||||||||| |||||| | || || ||||| ||| || ||| |||
Sbjct 241326 ATTAATCGCTGTTGATCTGGTGGGATC-CCTTCTTTGTCTTGAATTTTAGCTTTCACATT 241268
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | ||| ||||||| || || |||| || || ||||| || || | ||||| ||
Sbjct 241267 TTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCAC 241208
Query 48755 AAAAATCTGCAT 48766
||| || |||||
Sbjct 241207 AAAGATTTGCAT 241196
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| |||||||| || || |||| | | || | || ||||| ||||| ||||||||
Sbjct 241614 TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241555
Query 48636 ATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| | |||||||||||| |||||| | || || ||||| ||| || ||| |||
Sbjct 241554 ATTAATCGCTGTTGATCTGGTGGGATC-CCTTCTTTGTCTTGAATTTTAGCTTTCACATT 241496
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | ||| ||||| | || || |||| || || ||||| || || | ||||| ||
Sbjct 241495 TTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCAC 241436
Query 48755 AAAAATCTGCAT 48766
||| || |||||
Sbjct 241435 AAAGATTTGCAT 241424
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||| |||||||| || || |||| | || | || ||||| ||||| ||||||||
Sbjct 240930 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240871
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| | |||||||||||| | || | || || ||||| ||| || ||| |||
Sbjct 240870 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240811
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | ||| ||||||| || || |||| || || ||||| || || | ||||| |||
Sbjct 240810 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240751
Query 48756 AAAATCTGCAT 48766
|| || |||||
Sbjct 240750 AAGATTTGCAT 240740
>seq1265
Length=163832
Score = 82.4 bits (90), Expect = 6e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || ||||||||||||||||| | || | || ||||| |||||||| |||||
Sbjct 84799 CTCTTTCTGTATATTGTAATCAGATAGCGTGCGCCCATCTTCCAATTGCTTACCAGCAAA 84740
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCC 48664
|| || || |||||||||| |||| |||
Sbjct 84739 AATAAGACGTTGTTGATCCGGAGGAATGCC 84710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380826523952775
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