Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2302 109 4e-19 seq276 100 2e-16 seq1265 82.4 6e-11 >seq2302 Length=121279 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| || || || || ||||| || || ||||| ||||| || | || Sbjct 54341 AGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGT 54400 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || ||||| || | |||| || || Sbjct 54401 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCT 54460 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||||| | | || ||||| | ||| || |||| || Sbjct 54461 TTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTG 54520 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| ||||| |||||||| Sbjct 54521 ATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 54558 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 54113 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 54172 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || ||||| || | || | || || Sbjct 54173 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCT 54232 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||||||| | | || || || | |||||||||| ||| Sbjct 54233 TTGTCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 54292 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || |||||||| || ||||| Sbjct 54293 ATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 53885 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53944 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || ||||| |||| || |||||||| | || | || ||| Sbjct 53945 CCGTCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCC 54004 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | ||| || |||| ||||| |||| ||| Sbjct 54005 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 54064 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || |||||||| Sbjct 54065 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 53429 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53488 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || ||||| || | || | || ||| Sbjct 53489 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCC 53548 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | ||| || |||| ||||| |||| ||| Sbjct 53549 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 53608 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || || ||||| Sbjct 53609 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| || || ||||| || | || Sbjct 52745 AGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGT 52804 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || ||||| || | || | || ||| Sbjct 52805 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCC 52864 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | |||||||||| ||| Sbjct 52865 TTGTCTTGGATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 52924 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || || ||||| Sbjct 52925 ATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 52962 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 53657 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53716 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || || || || | || | || ||| Sbjct 53717 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 53776 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | ||| || |||| ||||| |||| ||| Sbjct 53777 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTA 53836 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || || ||||| Sbjct 53837 ATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 53201 AGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGT 53260 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| || || || || | || | || ||| Sbjct 53261 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCC 53320 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | |||||||||| ||| Sbjct 53321 TTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTA 53380 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || || || || ||||| Sbjct 53381 ATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 >seq276 Length=376631 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| || || |||| | || | || ||||| ||||| |||||||| Sbjct 240702 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240643 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | |||||||||||| | || | || || ||||| ||| || ||| ||| Sbjct 240642 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240583 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| ||||| | || || |||| || || |||||||| || | |||||| ||| Sbjct 240582 TCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACA 240523 Query 48756 AAAATCTGCATCGTG 48770 || || |||||| || Sbjct 240522 AAGATTTGCATCTTG 240508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| || ||||||| | || | || ||||| ||||| |||||||| Sbjct 241158 TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241099 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | |||||||||||| | || | || || ||||| ||| || ||| ||| Sbjct 241098 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTT 241039 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| ||||||| || || |||| || || ||||| || || | ||||| ||| Sbjct 241038 TCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240979 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 240978 AAGATTTGCAT 240968 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| || || |||| | || | || ||||| ||||| |||||||| Sbjct 241386 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241327 Query 48636 ATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || | |||||||||||| |||||| | || || ||||| ||| || ||| ||| Sbjct 241326 ATTAATCGCTGTTGATCTGGTGGGATC-CCTTCTTTGTCTTGAATTTTAGCTTTCACATT 241268 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | ||| ||||||| || || |||| || || ||||| || || | ||||| || Sbjct 241267 TTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCAC 241208 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 241207 AAAGATTTGCAT 241196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| || || |||| | | || | || ||||| ||||| |||||||| Sbjct 241614 TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 241555 Query 48636 ATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || | |||||||||||| |||||| | || || ||||| ||| || ||| ||| Sbjct 241554 ATTAATCGCTGTTGATCTGGTGGGATC-CCTTCTTTGTCTTGAATTTTAGCTTTCACATT 241496 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | ||| ||||| | || || |||| || || ||||| || || | ||||| || Sbjct 241495 TTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCAC 241436 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 241435 AAAGATTTGCAT 241424 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| || || |||| | || | || ||||| ||||| |||||||| Sbjct 240930 TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAA 240871 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | |||||||||||| | || | || || ||||| ||| || ||| ||| Sbjct 240870 ATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTT 240811 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| ||||||| || || |||| || || ||||| || || | ||||| ||| Sbjct 240810 TCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACA 240751 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 240750 AAGATTTGCAT 240740 >seq1265 Length=163832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||||||||||||||| | || | || ||||| |||||||| ||||| Sbjct 84799 CTCTTTCTGTATATTGTAATCAGATAGCGTGCGCCCATCTTCCAATTGCTTACCAGCAAA 84740 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCC 48664 || || || |||||||||| |||| ||| Sbjct 84739 AATAAGACGTTGTTGATCCGGAGGAATGCC 84710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380826523952775