Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019488.1
Length=34117
Score E
Sequences producing significant alignments: (Bits) Value
seq3309 515 9e-142
>seq3309
Length=43154
Score = 515 bits (570), Expect = 9e-142
Identities = 574/760 (76%), Gaps = 11/760 (1%)
Strand=Plus/Minus
Query 28496 TTCAAGCAGATGGGCAAGGCAACCGTTGACGGCATCCAGCTGCGTTTCACCGGTTCCATT 28555
|||||||||||||||| ||||| |||||| | |||||||| || ||||| ||||||
Sbjct 43129 TTCAAGCAGATGGGCACCCTTACCGTGGACGGCGTGCAGCTGCGCTTTACCGGCTCCATT 43070
Query 28556 CAGCGTGACGATACCGGCGAAGTGCAGGCCGTTGAGCTGGTTGTGCGCGGGCGCCATAAA 28615
||||| ||||| ||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 43069 CAGCGCGACGACACCGGCGAAGTGCAGGCGGTGGAGCTGGTCGTGCGTGGCCGCCACAAG 43010
Query 28616 GAAGTGGATTCCGGCGAGTGGAAAACCGGCGAGAGCAGCAGCACCAAAGTCAGCAGTACC 28675
|| |||| |||||||||||||| |||||||| |||| |||||| || | | |||
Sbjct 43009 GAGCTGGACTCCGGCGAGTGGAAGACCGGCGAATCAAGCACCACCAAGGTGTCCGGCACC 42950
Query 28676 AACAGCTACGCGAAGCTGACCATTAATGGTGAGGTGCTCTATGAGGTCGATCTGGTCAAC 28735
||||||||||| ||||||||||| || || || |||||||| ||| | || ||||| |||
Sbjct 42949 AACAGCTACGCCAAGCTGACCATCAACGGCGAAGTGCTCTACGAGATTGACCTGGTGAAC 42890
Query 28736 ATGGTAGAAATCGTTGGCGGCATGGACCTGATGGAAGAACACCGTAATGCCCTCGGCCTC 28795
||| | | ||||| | ||| | |||||||||||||| |||||||| || ||||||||
Sbjct 42889 ATGATTCACATCGTGGACGGTACGGACCTGATGGAAGCGCACCGTAACGCGCTCGGCCTG 42830
Query 28796 TGATTAACCTTAACGGCGCGGGCAGCCGCGCCAGTATTT---CATTAACAGGATACGAAC 28852
| ||||| | |||| || | || ||| ||| | ||| | || | | |
Sbjct 42829 TAATTAATC----CGGCAGGGCAAACCCTGCCGCCTTTTACCCCTTAGCGAGACATCATC 42774
Query 28853 ATGAGCGACAAGCTGACTG-AAAAGACCGTAAAACTGGATACTCCCATCATGCGCGGTAA 28911
|||| ||||| || | |||| ||||| | ||||| || || ||| |||| || ||
Sbjct 42773 ATGACTGACAAAACCACCGAAAAAAACCGTTGAGCTGGACACCCCGATCCTGCGTGGCAA 42714
Query 28912 AGCTGAAATTACCGAAATTGTGCTGCGCAAGCCTCAGTCCGGCGCACTGCGTGGCACCCG 28971
| | || |||| || || |||||||||| ||||||||||| ||||| || || ||
Sbjct 42713 AACCGAGATTAAAAGCATCGTCGTGCGCAAGCCGCAGTCCGGCGCGCTGCGCGGTACGCG 42654
Query 28972 TCTGCAGGCCATTATGGATATGGACGTGGGCGCAATGATGACTGTGATTCCACGAATCTC 29031
|||||||| | ||||| ||||||||| ||| ||||| || ||| | || || | |
Sbjct 42653 CCTGCAGGCGCTGATGGACATGGACGTGAACGCGATGATCACCGTGCTGCCGCGCGTAAC 42594
Query 29032 CACCCCGACGCTGACCGCGCAGGAAATGGCAGAGCTGGACCCCGCCGATCTCACCGCGCT 29091
|||||| |||||||| |||| ||||| | ||| |||||||||||||||| ||
Sbjct 42593 TACCCCGGCGCTGACCACGCATGAAATCACCGAGATGGACCCCGCCGATCTGGTGAGCCT 42534
Query 29092 GTCGGTAGAGGTGGTGACTTTTTTGTTGCCGAGGTCGGTGCTTGCCGGTTT-ACCGACAG 29150
||| || |||||||| |||||||| || || ||||||||| | | ||| | |||| |
Sbjct 42533 GTCCGTTGAGGTGGTCACTTTTTTACTGAAGAAGTCGGTGCTGTCGGATTTAAGCGACGG 42474
Query 29151 CCTGACGATTGATGATCTTGTGGCGGACATCGCCACCATCTTTCACTGGTCGCCATCCAT 29210
||||||| | || ||||| ||||||||||| |||||| ||||||||||| |||| || |
Sbjct 42473 CCTGACG-TAGACGATCTGGTGGCGGACATTGCCACCGTCTTTCACTGGACGCCGACCGT 42415
Query 29211 CACTGACGTTATGCCGCTGACTGAGGTGCTGGCGTGGCGG 29250
|| || | ||| ||||||| ||||| |||| |||||||
Sbjct 42414 -ACCGAGTTCATGACGCTGACCGAGGTACTGGAGTGGCGG 42376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109021817077150
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