Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq3309 515 9e-142 >seq3309 Length=43154 Score = 515 bits (570), Expect = 9e-142 Identities = 574/760 (76%), Gaps = 11/760 (1%) Strand=Plus/Minus Query 28496 TTCAAGCAGATGGGCAAGGCAACCGTTGACGGCATCCAGCTGCGTTTCACCGGTTCCATT 28555 |||||||||||||||| ||||| |||||| | |||||||| || ||||| |||||| Sbjct 43129 TTCAAGCAGATGGGCACCCTTACCGTGGACGGCGTGCAGCTGCGCTTTACCGGCTCCATT 43070 Query 28556 CAGCGTGACGATACCGGCGAAGTGCAGGCCGTTGAGCTGGTTGTGCGCGGGCGCCATAAA 28615 ||||| ||||| ||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 43069 CAGCGCGACGACACCGGCGAAGTGCAGGCGGTGGAGCTGGTCGTGCGTGGCCGCCACAAG 43010 Query 28616 GAAGTGGATTCCGGCGAGTGGAAAACCGGCGAGAGCAGCAGCACCAAAGTCAGCAGTACC 28675 || |||| |||||||||||||| |||||||| |||| |||||| || | | ||| Sbjct 43009 GAGCTGGACTCCGGCGAGTGGAAGACCGGCGAATCAAGCACCACCAAGGTGTCCGGCACC 42950 Query 28676 AACAGCTACGCGAAGCTGACCATTAATGGTGAGGTGCTCTATGAGGTCGATCTGGTCAAC 28735 ||||||||||| ||||||||||| || || || |||||||| ||| | || ||||| ||| Sbjct 42949 AACAGCTACGCCAAGCTGACCATCAACGGCGAAGTGCTCTACGAGATTGACCTGGTGAAC 42890 Query 28736 ATGGTAGAAATCGTTGGCGGCATGGACCTGATGGAAGAACACCGTAATGCCCTCGGCCTC 28795 ||| | | ||||| | ||| | |||||||||||||| |||||||| || |||||||| Sbjct 42889 ATGATTCACATCGTGGACGGTACGGACCTGATGGAAGCGCACCGTAACGCGCTCGGCCTG 42830 Query 28796 TGATTAACCTTAACGGCGCGGGCAGCCGCGCCAGTATTT---CATTAACAGGATACGAAC 28852 | ||||| | |||| || | || ||| ||| | ||| | || | | | Sbjct 42829 TAATTAATC----CGGCAGGGCAAACCCTGCCGCCTTTTACCCCTTAGCGAGACATCATC 42774 Query 28853 ATGAGCGACAAGCTGACTG-AAAAGACCGTAAAACTGGATACTCCCATCATGCGCGGTAA 28911 |||| ||||| || | |||| ||||| | ||||| || || ||| |||| || || Sbjct 42773 ATGACTGACAAAACCACCGAAAAAAACCGTTGAGCTGGACACCCCGATCCTGCGTGGCAA 42714 Query 28912 AGCTGAAATTACCGAAATTGTGCTGCGCAAGCCTCAGTCCGGCGCACTGCGTGGCACCCG 28971 | | || |||| || || |||||||||| ||||||||||| ||||| || || || Sbjct 42713 AACCGAGATTAAAAGCATCGTCGTGCGCAAGCCGCAGTCCGGCGCGCTGCGCGGTACGCG 42654 Query 28972 TCTGCAGGCCATTATGGATATGGACGTGGGCGCAATGATGACTGTGATTCCACGAATCTC 29031 |||||||| | ||||| ||||||||| ||| ||||| || ||| | || || | | Sbjct 42653 CCTGCAGGCGCTGATGGACATGGACGTGAACGCGATGATCACCGTGCTGCCGCGCGTAAC 42594 Query 29032 CACCCCGACGCTGACCGCGCAGGAAATGGCAGAGCTGGACCCCGCCGATCTCACCGCGCT 29091 |||||| |||||||| |||| ||||| | ||| |||||||||||||||| || Sbjct 42593 TACCCCGGCGCTGACCACGCATGAAATCACCGAGATGGACCCCGCCGATCTGGTGAGCCT 42534 Query 29092 GTCGGTAGAGGTGGTGACTTTTTTGTTGCCGAGGTCGGTGCTTGCCGGTTT-ACCGACAG 29150 ||| || |||||||| |||||||| || || ||||||||| | | ||| | |||| | Sbjct 42533 GTCCGTTGAGGTGGTCACTTTTTTACTGAAGAAGTCGGTGCTGTCGGATTTAAGCGACGG 42474 Query 29151 CCTGACGATTGATGATCTTGTGGCGGACATCGCCACCATCTTTCACTGGTCGCCATCCAT 29210 ||||||| | || ||||| ||||||||||| |||||| ||||||||||| |||| || | Sbjct 42473 CCTGACG-TAGACGATCTGGTGGCGGACATTGCCACCGTCTTTCACTGGACGCCGACCGT 42415 Query 29211 CACTGACGTTATGCCGCTGACTGAGGTGCTGGCGTGGCGG 29250 || || | ||| ||||||| ||||| |||| ||||||| Sbjct 42414 -ACCGAGTTCATGACGCTGACCGAGGTACTGGAGTGGCGG 42376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109021817077150