Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq3495 502 6e-138 >seq3495 Length=4271 Score = 502 bits (556), Expect = 6e-138 Identities = 467/587 (80%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 16129 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16188 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 16189 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16246 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 16247 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16306 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 16307 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 16366 ||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 16367 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16426 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 16427 AGTACAGCCTGACCGGTACTGAAGACGATGCCATGCTGCTGGCCGATGTGCCTTACCCGC 16486 ||||||||||||||||||| || ||||||||||| |||||| | ||||| |||||||||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 16487 AGCGCAAATATCAGCAGATGGGCCTTAAGGCTGGGCAGATTTTCTGGTACCGCGCGCAGC 16546 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 16547 TGGTTGACCGCAGCGGTAACGAGTCAGGTTATACCGGCTGGGTTCGTGGGCAGGCCAGTA 16606 |||| ||||| | ||| || || || || || |||| | || ||||| |||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 16607 TCGATGTTTCTGACATCACAGATGTGATCCTTGAAGACATCAAAGGGGCTGAGACGT--T 16664 | ||||| || || |||||||||| || || || ||||| ||| || ||| || | Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAAC--CTCAGAAGTCTT 490 Query 16665 CAAAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 16711 ||| |||||||||||| | || |||| ||||| ||| ||| | |||| Sbjct 489 CAAGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120148255053450