Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq3495 527 2e-145 >seq3495 Length=4271 Score = 527 bits (584), Expect = 2e-145 Identities = 470/585 (80%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 16408 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16467 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 16468 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16525 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 16526 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16585 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 16586 GTAAAGTGGGCAATCCACCTAAGCCGGTTGGCTTCATCGCTTCTGAAAATGTGGTTTTCG 16645 ||||||| || ||||||||||| |||||||| || | ||||||||||| || || || | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 16646 GCATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16705 | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 16706 AGTACAGCCTGACCGGAACCGAGGACGATGCGATACTGCTGGCCGATGTGCCTTATCCGC 16765 |||||||||||||||| |||||||||||||| ||||||||| | ||||| ||||| |||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 16766 AGCGCAAATATCAGCAGATGGGCCTCAAGGCTGGGCAGATTTTCTGGTACCGCGCTCAGC 16825 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 16826 TGGTGGACCGCAGCGGCAACGAATCAGGGTACACAGAATGGGTGCGAGGACAGGCCAGCA 16885 |||||||||| | |||||| ||||| |||||||| |||| || || || ||||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 16886 TCGATGTTTCCGACATCACAGATGTGATCCTGGAGGACATGAAAGGCTCCGATACGTTCA 16945 | ||||| || || |||||||||| || ||||||||||| ||| ||| || |||| Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488 Query 16946 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 16990 | |||||||||||| | || |||| ||||| ||| ||| | |||| Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132855043909650