Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019709.1
Length=41567
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 527 2e-145
>seq3495
Length=4271
Score = 527 bits (584), Expect = 2e-145
Identities = 470/585 (80%), Gaps = 4/585 (1%)
Strand=Plus/Minus
Query 16408 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16467
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 16468 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16525
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 16526 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16585
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 16586 GTAAAGTGGGCAATCCACCTAAGCCGGTTGGCTTCATCGCTTCTGAAAATGTGGTTTTCG 16645
||||||| || ||||||||||| |||||||| || | ||||||||||| || || || |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 16646 GCATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16705
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 16706 AGTACAGCCTGACCGGAACCGAGGACGATGCGATACTGCTGGCCGATGTGCCTTATCCGC 16765
|||||||||||||||| |||||||||||||| ||||||||| | ||||| ||||| ||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 16766 AGCGCAAATATCAGCAGATGGGCCTCAAGGCTGGGCAGATTTTCTGGTACCGCGCTCAGC 16825
||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 16826 TGGTGGACCGCAGCGGCAACGAATCAGGGTACACAGAATGGGTGCGAGGACAGGCCAGCA 16885
|||||||||| | |||||| ||||| |||||||| |||| || || || |||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 16886 TCGATGTTTCCGACATCACAGATGTGATCCTGGAGGACATGAAAGGCTCCGATACGTTCA 16945
| ||||| || || |||||||||| || ||||||||||| ||| ||| || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 16946 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 16990
| |||||||||||| | || |||| ||||| ||| ||| | ||||
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132855043909650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |