Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019710.1
Length=40710
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 484 2e-132
seq14394 206 7e-49
>seq3495
Length=4271
Score = 484 bits (536), Expect = 2e-132
Identities = 484/624 (78%), Gaps = 4/624 (1%)
Strand=Plus/Minus
Query 15785 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 15844
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 15845 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 15902
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 15903 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 15962
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 15963 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 16022
||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 16023 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16082
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 16083 AGTACAGCCTGACCGGGAGCGAAGATGATGCCATTCTTCTGAGCGATGTTCCCTATCCGC 16142
|||||||||||||||| | ||| || |||||||| || |||| ||||| || || ||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 16143 AGCGCAAGTATCAGCAGATGGGCCTGAAGGCGGGGCAAATTTTCTGGTACCGGGCGCAGC 16202
||||||| ||||||||||||||||| || || ||||| ||||||||||||| |||||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 16203 TGGTGGACAGGACAGGCAATGAGTCGGGTTATACCGACTGGGTACGTGGACAGGCCAGTA 16262
|||||||| | || |||||||| || || || ||||| | |||||||| ||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 16263 TCGATGTGTCGGATATCACCGATGTTATCCTGGAGGACATTAAAGAATCGGACACGTTCA 16322
| ||||| ||||||||||| |||| || ||||||||||||||| || || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 16323 AGGAACTGATCGAAAGCGCAGTAGACAGCAACGAAAAAATTGCTGGTATGGCTGACGATA 16382
|||| |||||||| || || | ||||| || ||| | |||| || |||| | |
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATGCGA 428
Query 16383 TCAGACAGAACGCTGACGATCTGG 16406
| | |||| ||||| | |||||
Sbjct 427 TTAAGGAGAATGCTGATGGTCTGG 404
>seq14394
Length=813
Score = 206 bits (228), Expect = 7e-49
Identities = 271/368 (74%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 20694 GATTACGTTGAACAGCGTATATCGCTTGACGAGCGCATCATCACCAGGCCAGCGGCTACG 20753
|| ||||| ||| |||| |||||||| ||| |||||||||| | ||| ||||||||||||
Sbjct 118 GACTACGTAGAAGAGCGCATATCGCTAGACAAGCGCATCATAAGCAGACCAGCGGCTACG 177
Query 20754 TACTTTATGCGGGCCGGTGCAACGCATTACCGAGAAGGTATCCTCAATGGTGCTTTGCTG 20813
|||||||| | || ||||| ||||| || || ||||| ||| | || || ||| |||||
Sbjct 178 TACTTTATTAGAGCTGGTGCGACGCACTATCGTGAAGGCATCATGAACGGCGCTCTGCTG 237
Query 20814 GTTGTCGACGCGTCAATGTCTCCATGTGATGGTTCATTGCTGGTTTGCACAGATAG-CGG 20872
|| ||||| |||||| || ||| |||||||| ||||||||||| |||| ||| | ||
Sbjct 238 GTAGTCGATGCGTCACTGAATCCGTGTGATGGCTCATTGCTGGTATGCA-GGATGGAAGG 296
Query 20873 TGAGTTTAGGATTAAGCGGTATCGCACACACCCGCGGCCACACCTGGAAAACCTTGAGAA 20932
||| | ||||| ||||| ||||| | || || | ||||||||| ||| | | |||
Sbjct 297 CGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCAGAC 356
Query 20933 CGGTAAACG-GGAGAGTTTGCTAGATAAGGATGAGGTATCCGACACTTCGCGTCCGGTAT 20991
|| | || | |||| | | || | | ||||| | | ||| | || | | | |
Sbjct 357 TGGCAGGCGAGAAGAG-ATACCAGTTCACGATGACGGA-ACGAGCC--CGGATGCTATCT 412
Query 20992 TTGGGGTGATCACGTATATCATCAACGACGCGCGGTCTGGTGAGTTTGATGACTACCCGC 21051
||||||||||||| || ||||||||| | || | ||||||||||| || | ||||
Sbjct 413 TTGGGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCCCGG 472
Query 21052 TGAAGTGA 21059
| | ||||
Sbjct 473 TTATGTGA 480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130113423051200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |