Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq3495 484 2e-132 seq14394 206 7e-49 >seq3495 Length=4271 Score = 484 bits (536), Expect = 2e-132 Identities = 484/624 (78%), Gaps = 4/624 (1%) Strand=Plus/Minus Query 15785 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 15844 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 15845 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 15902 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 15903 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 15962 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 15963 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 16022 ||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 16023 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16082 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 16083 AGTACAGCCTGACCGGGAGCGAAGATGATGCCATTCTTCTGAGCGATGTTCCCTATCCGC 16142 |||||||||||||||| | ||| || |||||||| || |||| ||||| || || |||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 16143 AGCGCAAGTATCAGCAGATGGGCCTGAAGGCGGGGCAAATTTTCTGGTACCGGGCGCAGC 16202 ||||||| ||||||||||||||||| || || ||||| ||||||||||||| ||||||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 16203 TGGTGGACAGGACAGGCAATGAGTCGGGTTATACCGACTGGGTACGTGGACAGGCCAGTA 16262 |||||||| | || |||||||| || || || ||||| | |||||||| |||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 16263 TCGATGTGTCGGATATCACCGATGTTATCCTGGAGGACATTAAAGAATCGGACACGTTCA 16322 | ||||| ||||||||||| |||| || ||||||||||||||| || || |||| Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488 Query 16323 AGGAACTGATCGAAAGCGCAGTAGACAGCAACGAAAAAATTGCTGGTATGGCTGACGATA 16382 |||| |||||||| || || | ||||| || ||| | |||| || |||| | | Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATGCGA 428 Query 16383 TCAGACAGAACGCTGACGATCTGG 16406 | | |||| ||||| | ||||| Sbjct 427 TTAAGGAGAATGCTGATGGTCTGG 404 >seq14394 Length=813 Score = 206 bits (228), Expect = 7e-49 Identities = 271/368 (74%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 20694 GATTACGTTGAACAGCGTATATCGCTTGACGAGCGCATCATCACCAGGCCAGCGGCTACG 20753 || ||||| ||| |||| |||||||| ||| |||||||||| | ||| |||||||||||| Sbjct 118 GACTACGTAGAAGAGCGCATATCGCTAGACAAGCGCATCATAAGCAGACCAGCGGCTACG 177 Query 20754 TACTTTATGCGGGCCGGTGCAACGCATTACCGAGAAGGTATCCTCAATGGTGCTTTGCTG 20813 |||||||| | || ||||| ||||| || || ||||| ||| | || || ||| ||||| Sbjct 178 TACTTTATTAGAGCTGGTGCGACGCACTATCGTGAAGGCATCATGAACGGCGCTCTGCTG 237 Query 20814 GTTGTCGACGCGTCAATGTCTCCATGTGATGGTTCATTGCTGGTTTGCACAGATAG-CGG 20872 || ||||| |||||| || ||| |||||||| ||||||||||| |||| ||| | || Sbjct 238 GTAGTCGATGCGTCACTGAATCCGTGTGATGGCTCATTGCTGGTATGCA-GGATGGAAGG 296 Query 20873 TGAGTTTAGGATTAAGCGGTATCGCACACACCCGCGGCCACACCTGGAAAACCTTGAGAA 20932 ||| | ||||| ||||| ||||| | || || | ||||||||| ||| | | ||| Sbjct 297 CGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCAGAC 356 Query 20933 CGGTAAACG-GGAGAGTTTGCTAGATAAGGATGAGGTATCCGACACTTCGCGTCCGGTAT 20991 || | || | |||| | | || | | ||||| | | ||| | || | | | | Sbjct 357 TGGCAGGCGAGAAGAG-ATACCAGTTCACGATGACGGA-ACGAGCC--CGGATGCTATCT 412 Query 20992 TTGGGGTGATCACGTATATCATCAACGACGCGCGGTCTGGTGAGTTTGATGACTACCCGC 21051 ||||||||||||| || ||||||||| | || | ||||||||||| || | |||| Sbjct 413 TTGGGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCCCGG 472 Query 21052 TGAAGTGA 21059 | | |||| Sbjct 473 TTATGTGA 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130113423051200