Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019714.1
Length=39026
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 518 8e-143
seq2959 289 7e-74
>seq3495
Length=4271
Score = 518 bits (574), Expect = 8e-143
Identities = 468/585 (80%), Gaps = 4/585 (1%)
Strand=Plus/Minus
Query 16455 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16514
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 16515 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16572
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 16573 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16632
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 16633 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTCATCGCTTCTGAAAATGTGGTTTTCG 16692
||||||| || |||||||| || |||||||| || | ||||||||||| || || || |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 16693 GCATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16752
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 16753 AGTACAGCCTGACCGGAACCGAGGACGATGCGATGCTGCTGGCCGATGTGCCTTATCCGC 16812
|||||||||||||||| |||||||||||||| || |||||| | ||||| ||||| ||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 16813 AGCGCAAATATCAGCAGATGGGCCTCAAGGCTGGGCAGATTTTCTGGTACCGCGCTCAGC 16872
||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 16873 TGGTGGACCGCAGCGGCAACGAATCAGGGTACACAGAATGGGTGCGAGGACAGGCCAGCA 16932
|||||||||| | |||||| ||||| |||||||| |||| || || || |||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 16933 TCGATGTTTCCGACATCACAGATGTGATCCTGGAGGACATGAAAGGCTCCGATACGTTCA 16992
| ||||| || || |||||||||| || ||||||||||| ||| ||| || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 16993 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 17037
| |||||||||||| | || |||| ||||| ||| ||| | ||||
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443
>seq2959
Length=4395
Score = 289 bits (320), Expect = 7e-74
Identities = 460/647 (71%), Gaps = 16/647 (2%)
Strand=Plus/Minus
Query 30601 GCGCGGAGTGTTGATTTTCTCGATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 30659
|||||| ||| |||||||| ||||||||| ||| ||||||| ||||| |||
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052
Query 30660 TTGCCAACGCCGGGAGGATGTCGGTTAGCGTGCTGCGAAATCCAGCATCGATGGATGATG 30719
|||| || || | |||| || | ||||||||||||||| ||||| || |
Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992
Query 30720 AAGGCTGGGCGCGTGTTGCTAACGGCATGAGTCAGCTTGCA-GATTTGGATGTATGGGTA 30778
|||||||||| || | || ||| | || |||| ||| | || |||||| |
Sbjct 991 AAGGCTGGGCAAAAGTCACCGCTGGAATGGGA-AGATTGCTTGATCTCGACGTATGGATT 933
Query 30779 GTCGATGCCT-CGCGTTTATCGGTCGAAGAAATTCGCTCAATCGCAGAGCGGCACAAACA 30837
|| || ||| | | | | || | || | || ||| | ||||| || || ||||| |
Sbjct 932 GTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAAGCG 874
Query 30838 GGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCCGAA 30897
| || || || || |||||| | | || || || ||||||||||| ||||| ||
Sbjct 873 CAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCCAAA 814
Query 30898 AGCAGACCGCAACGACCTCGCAATTGCTCACATCTCCGGAAGCCTGAAGGCGATGGCGAA 30957
||||||||||||||||| || || || ||||||||||| ||||||||| ||||| ||
Sbjct 813 GGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGCAAA 754
Query 30958 AGACCTGAAAACGCCAGTTATCTCCCTAAGTCAGCTTTCGCGCGATGTTGAGAAGCGACC 31017
||| || |||||||| ||||| || || |||||||| || ||||||||||| ||||| ||
Sbjct 753 AGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCGCCC 694
Query 31018 AA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACAGGA 31071
| ||| || ||||| ||||| ||| |||| || || ||||||||||| |||||
Sbjct 693 GAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCAGGA 634
Query 31072 CGCAGACTCAATCATCATGCTCTATCGGGAAGCAGTATATGACG-AGAA-CAGTAGCGCC 31129
||| ||| |||||||||||||| || ||||| || ||||||| |||| | | ||
Sbjct 633 CGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA--GCT 576
Query 31130 GCGCCATTTGCTGAAATCATTGTGACAAAAAACCGTTTTGGCTCACTTGGTACGGTTTAC 31189
||| || || |||||||| || || |||||||| || || || || || || |||
Sbjct 575 GCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTCTAC 516
Query 31190 CAGCGGTTCTGCAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 31236
||| ||| ||||| || ||| || |||||||| |||||
Sbjct 515 CAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124726154059800
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