Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019715.1
Length=39578
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 518 8e-143
seq14394 131 4e-26
>seq3495
Length=4271
Score = 518 bits (574), Expect = 8e-143
Identities = 468/585 (80%), Gaps = 4/585 (1%)
Strand=Plus/Minus
Query 16407 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16466
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 16467 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16524
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 16525 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16584
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 16585 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTCATCGCTTCTGAAAATGTGGTTTTCG 16644
||||||| || |||||||| || |||||||| || | ||||||||||| || || || |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 16645 GCATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16704
| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 16705 AGTACAGCCTGACCGGAACCGAGGACGATGCGATGCTGCTGGCCGATGTGCCTTATCCGC 16764
|||||||||||||||| |||||||||||||| || |||||| | ||||| ||||| ||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 16765 AGCGCAAATATCAGCAGATGGGCCTCAAGGCTGGGCAGATTTTCTGGTACCGCGCTCAGC 16824
||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 16825 TGGTGGACCGCAGCGGCAACGAATCAGGGTACACAGAATGGGTGCGAGGACAGGCCAGCA 16884
|||||||||| | |||||| ||||| |||||||| |||| || || || |||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 16885 TCGATGTTTCCGACATCACAGATGTGATCCTGGAGGACATGAAAGGCTCCGATACGTTCA 16944
| ||||| || || |||||||||| || ||||||||||| ||| ||| || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 16945 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 16989
| |||||||||||| | || |||| ||||| ||| ||| | ||||
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443
>seq14394
Length=813
Score = 131 bits (144), Expect = 4e-26
Identities = 178/245 (73%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 20769 GTAGCGGATGCCTCACT--ATCACATAGTGATGGTTCATTACTGCTTTGTAGAATGGATA 20826
|||| ||||| ||||| ||| | | ||||||| ||||| ||| | || || |||||
Sbjct 238 GTAGTCGATGCGTCACTGAATC-CGT-GTGATGGCTCATTGCTGGTATGCAGGATGGAAG 295
Query 20827 GAGAACTGAGGATAAAAAGATATCCCAAAACCCCAAAATCTCATCTTTAGGATTTGCAGA 20886
| || ||||||||||| | |||| || ||| | | || ||| | ||||||||||
Sbjct 296 GCGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCAGA 355
Query 20887 AAGGGAGGCGTGAACAGATACCTGCGCATGAAGACGGAACTAGTCCAGATGTGATATTTG 20946
|| ||||| ||| ||||||| | || || |||||||| || || |||| || ||||
Sbjct 356 CTGGCAGGCGAGAAGAGATACCAGTTCACGATGACGGAACGAGCCCGGATGCTATCTTTG 415
Query 20947 TGGTGATCACATACATCATCAACGATGCTCGTTATGGTGAGTTTGATGACTACCCGCTGA 21006
||||||||||||| |||||||||| | ||||||||||| || | |||| | |
Sbjct 416 GGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCCCGGTTA 475
Query 21007 AGTGA 21011
||||
Sbjct 476 TGTGA 480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 126492052209000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |