Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019715.1 Length=39578 Score E Sequences producing significant alignments: (Bits) Value seq3495 518 8e-143 seq14394 131 4e-26 >seq3495 Length=4271 Score = 518 bits (574), Expect = 8e-143 Identities = 468/585 (80%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 16407 GCCTATGAAGCGCAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16466 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 16467 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16524 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 16525 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16584 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 16585 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTCATCGCTTCTGAAAATGTGGTTTTCG 16644 ||||||| || |||||||| || |||||||| || | ||||||||||| || || || | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 16645 GCATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16704 | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 16705 AGTACAGCCTGACCGGAACCGAGGACGATGCGATGCTGCTGGCCGATGTGCCTTATCCGC 16764 |||||||||||||||| |||||||||||||| || |||||| | ||||| ||||| |||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 16765 AGCGCAAATATCAGCAGATGGGCCTCAAGGCTGGGCAGATTTTCTGGTACCGCGCTCAGC 16824 ||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 16825 TGGTGGACCGCAGCGGCAACGAATCAGGGTACACAGAATGGGTGCGAGGACAGGCCAGCA 16884 |||||||||| | |||||| ||||| |||||||| |||| || || || ||||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 16885 TCGATGTTTCCGACATCACAGATGTGATCCTGGAGGACATGAAAGGCTCCGATACGTTCA 16944 | ||||| || || |||||||||| || ||||||||||| ||| ||| || |||| Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488 Query 16945 AAGACCTGATCGAGAACGCTGTGGACAGCAATGAAAAAATTGCTG 16989 | |||||||||||| | || |||| ||||| ||| ||| | |||| Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTG 443 >seq14394 Length=813 Score = 131 bits (144), Expect = 4e-26 Identities = 178/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 20769 GTAGCGGATGCCTCACT--ATCACATAGTGATGGTTCATTACTGCTTTGTAGAATGGATA 20826 |||| ||||| ||||| ||| | | ||||||| ||||| ||| | || || ||||| Sbjct 238 GTAGTCGATGCGTCACTGAATC-CGT-GTGATGGCTCATTGCTGGTATGCAGGATGGAAG 295 Query 20827 GAGAACTGAGGATAAAAAGATATCCCAAAACCCCAAAATCTCATCTTTAGGATTTGCAGA 20886 | || ||||||||||| | |||| || ||| | | || ||| | |||||||||| Sbjct 296 GCGAGCTGAGGATAAAGCGCTATCGTAAGCATCCACAGCCACACCTTGAAGATTTGCAGA 355 Query 20887 AAGGGAGGCGTGAACAGATACCTGCGCATGAAGACGGAACTAGTCCAGATGTGATATTTG 20946 || ||||| ||| ||||||| | || || |||||||| || || |||| || |||| Sbjct 356 CTGGCAGGCGAGAAGAGATACCAGTTCACGATGACGGAACGAGCCCGGATGCTATCTTTG 415 Query 20947 TGGTGATCACATACATCATCAACGATGCTCGTTATGGTGAGTTTGATGACTACCCGCTGA 21006 ||||||||||||| |||||||||| | ||||||||||| || | |||| | | Sbjct 416 GGGTGATCACATACTGCATCAACGATATGAGGGCGGGTGAGTTTGACGATTGCCCGGTTA 475 Query 21007 AGTGA 21011 |||| Sbjct 476 TGTGA 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126492052209000