Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq3495 484 2e-132 seq2959 304 3e-78 >seq3495 Length=4271 Score = 484 bits (536), Expect = 2e-132 Identities = 484/624 (78%), Gaps = 4/624 (1%) Strand=Plus/Minus Query 16398 GCCTATGAAGCACAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16457 || || || || ||||||| || || || |||||||||| ||||||||| || || Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967 Query 16458 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16515 | ||| || ||||| || | || ||| || | || ||||||||||| |||||| | | Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908 Query 16516 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16575 || | || || || ||||||||| ||||| | || | || ||| || |||| Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848 Query 16576 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 16635 ||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| | Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788 Query 16636 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16695 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728 Query 16696 AGTACAGCCTGACCGGGAGCGAAGATGATGCCATTCTTCTGAGCGATGTTCCCTATCCGC 16755 |||||||||||||||| | ||| || |||||||| || |||| ||||| || || |||| Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668 Query 16756 AGCGCAAGTATCAGCAGATGGGCCTGAAGGCGGGGCAAATTTTCTGGTACCGGGCGCAGC 16815 ||||||| ||||||||||||||||| || || ||||| ||||||||||||| ||||||| Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608 Query 16816 TGGTGGACAGGACAGGCAATGAGTCGGGTTATACCGACTGGGTACGTGGACAGGCCAGTA 16875 |||||||| | || |||||||| || || || ||||| | |||||||| |||||||| Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548 Query 16876 TCGATGTGTCGGATATCACCGATGTTATCCTGGAGGACATTAAAGAATCGGACACGTTCA 16935 | ||||| ||||||||||| |||| || ||||||||||||||| || || |||| Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488 Query 16936 AGGAACTGATCGAAAGCGCAGTAGACAGCAACGAAAAAATTGCTGGTATGGCTGACGATA 16995 |||| |||||||| || || | ||||| || ||| | |||| || |||| | | Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATGCGA 428 Query 16996 TCAGACAGAACGCTGACGATCTGG 17019 | | |||| ||||| | ||||| Sbjct 427 TTAAGGAGAATGCTGATGGTCTGG 404 >seq2959 Length=4395 Score = 304 bits (336), Expect = 3e-78 Identities = 465/650 (72%), Gaps = 22/650 (3%) Strand=Plus/Minus Query 31767 GCGCGGAGTATTGATTTTCTCAATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 31825 |||||| || |||||||| ||||||||| ||| ||||||| ||||| ||| Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052 Query 31826 TTGCCAACGCCGGGAGGATGTCGGTTAGCGTACTGCGAAATCCTGCATCGATGGATGACG 31885 |||| || || | |||| || | |||||||||||| ||| ||||| |||| Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992 Query 31886 AAGGCTGGGCGCGCGTTGCTAACGGCATGAATC---AGCTTGCG-GATTTGGATGTATGG 31941 |||||||||| || || || |||| || |||| ||| | || |||||| Sbjct 991 AAGGCTGGGCAAAAGTC----ACCGCTGGAATGGGAAGATTGCTTGATCTCGACGTATGG 936 Query 31942 GTAGTCGATGC-ATCGCGGTTATCGGTCGAAGAAATACGCTCAATCGCAGAACGGCACAA 32000 | || || || | | | | | || | || | || ||| | ||||| ||||| ||||| Sbjct 935 ATTGTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAA 877 Query 32001 ACAGGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCC 32060 | | || || || || |||||| | | || || || ||||||||||| ||||| Sbjct 876 GCGCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCC 817 Query 32061 GAAAGCAGACCGCAACGACCTCGCAATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGC 32120 || ||||||||||||||||| || || || |||||||| || ||||||||| ||||| Sbjct 816 AAAGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGC 757 Query 32121 GAAAGACCTGAAAACGCCTGTTATCTCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCG 32180 ||||| || |||||||||||||| || || |||||||| || ||||||||||| ||||| Sbjct 756 AAAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCG 697 Query 32181 ACCAA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACA 32234 || | ||| || ||||| ||||| ||| |||| || || ||||||||||| || Sbjct 696 CCCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCA 637 Query 32235 GGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGC 32292 |||||| ||| |||||||||||||| || ||||| || ||||||| |||| | | Sbjct 636 GGACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA-- 579 Query 32293 GCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTT 32352 || ||| || || ||||||||||| || |||||||| || || ||| || || || Sbjct 578 GCTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTC 519 Query 32353 TACCAGCGGTTCTGTAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 32402 |||||| ||| |||||| || ||| || |||||||| ||||| Sbjct 518 TACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128337927629450