Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019767.1
Length=40155
Score E
Sequences producing significant alignments: (Bits) Value
seq3495 484 2e-132
seq2959 304 3e-78
>seq3495
Length=4271
Score = 484 bits (536), Expect = 2e-132
Identities = 484/624 (78%), Gaps = 4/624 (1%)
Strand=Plus/Minus
Query 16398 GCCTATGAAGCACAATGGCGCCGCAACGACGGGAACTGGGTTAACGTGCCGCGCACCTCC 16457
|| || || || ||||||| || || || |||||||||| ||||||||| || ||
Sbjct 1025 GCGTACGAGGCCGAATGGCGACGAGACAGTGGAAACTGGGTTAGCGTGCCGCGTACGTC- 967
Query 16458 ACCACGTCA--TTCGACGTCCCGGGGATTTATGCCGGGCGCTACCTGGTGCGGGTGCGCG 16515
| ||| || ||||| || | || ||| || | || ||||||||||| |||||| | |
Sbjct 966 ATCAC-TCGGTTTCGAAGTGCAGGAGATCTACTCTGGTCGCTACCTGGTTCGGGTGAGAG 908
Query 16516 CAATCAATGCCGCAGAAATTTCATCCGGATGGGGCTATTCAGAAGAGAAAACGCTGACGG 16575
|| | || || || ||||||||| ||||| | || | || ||| || ||||
Sbjct 907 CAGTAAACTCCAGTGATGTTTCATCCGTATGGGCGTCATCTGCTGAAGTAACTCTTACGG 848
Query 16576 GTAAAGTGGGCAATCCACCGAAGCCGGTTGGCTTTATCGCCTCTGAAAACGTGGTGTTCG 16635
||||||| || |||||||| || |||||||| |||| || ||||||||||| ||||| |
Sbjct 847 GTAAAGTTGGTAATCCACCTAAACCGGTTGGGTTTACTGCTTCTGAAAACGTTGTGTTTG 788
Query 16636 GTATCGAGCTGAACTGGGGATTCCCGGCGAATACCGACGACACGCTGAAGACGGAAATTC 16695
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 787 GTATCGAGCTGAACTGGGGTTTCCCGGCGAACACCGAGGACACGCTGAAGACGGAAATTC 728
Query 16696 AGTACAGCCTGACCGGGAGCGAAGATGATGCCATTCTTCTGAGCGATGTTCCCTATCCGC 16755
|||||||||||||||| | ||| || |||||||| || |||| ||||| || || ||||
Sbjct 727 AGTACAGCCTGACCGGTACCGAGGACGATGCCATACTGCTGACTGATGTACCTTACCCGC 668
Query 16756 AGCGCAAGTATCAGCAGATGGGCCTGAAGGCGGGGCAAATTTTCTGGTACCGGGCGCAGC 16815
||||||| ||||||||||||||||| || || ||||| ||||||||||||| |||||||
Sbjct 667 AGCGCAAATATCAGCAGATGGGCCTTAAAGCTGGGCAGGTTTTCTGGTACCGCGCGCAGC 608
Query 16816 TGGTGGACAGGACAGGCAATGAGTCGGGTTATACCGACTGGGTACGTGGACAGGCCAGTA 16875
|||||||| | || |||||||| || || || ||||| | |||||||| ||||||||
Sbjct 607 TGGTGGACCGAACCGGCAATGAATCCGGGTACACCGAATTTGTACGTGGCCAGGCCAGCG 548
Query 16876 TCGATGTGTCGGATATCACCGATGTTATCCTGGAGGACATTAAAGAATCGGACACGTTCA 16935
| ||||| ||||||||||| |||| || ||||||||||||||| || || ||||
Sbjct 547 TTGATGTATCGGATATCACAGATGCAATTCTGGAGGACATTAAAACCTCAGAAGTCTTCA 488
Query 16936 AGGAACTGATCGAAAGCGCAGTAGACAGCAACGAAAAAATTGCTGGTATGGCTGACGATA 16995
|||| |||||||| || || | ||||| || ||| | |||| || |||| | |
Sbjct 487 AGGACCTGATCGAGGATGCCGTGGCCAGCAGTGACAAACTGGCTGAACTGTCTGATGCGA 428
Query 16996 TCAGACAGAACGCTGACGATCTGG 17019
| | |||| ||||| | |||||
Sbjct 427 TTAAGGAGAATGCTGATGGTCTGG 404
>seq2959
Length=4395
Score = 304 bits (336), Expect = 3e-78
Identities = 465/650 (72%), Gaps = 22/650 (3%)
Strand=Plus/Minus
Query 31767 GCGCGGAGTATTGATTTTCTCAATGGAAATGAGCGCATTGCAGATTGCAGAGCGA-AGCA 31825
|||||| || |||||||| ||||||||| ||| ||||||| ||||| |||
Sbjct 1110 GCGCGGCGTGCTGATTTTCAGCATGGAAATGGACGCTAATCAGATTGTGGAGCGCCAGC- 1052
Query 31826 TTGCCAACGCCGGGAGGATGTCGGTTAGCGTACTGCGAAATCCTGCATCGATGGATGACG 31885
|||| || || | |||| || | |||||||||||| ||| ||||| ||||
Sbjct 1051 TTGCAGGAGCAGGAAACTTGTCAGTGTCGGCACTGCGAAATCCAGCACAAATGGACGACG 992
Query 31886 AAGGCTGGGCGCGCGTTGCTAACGGCATGAATC---AGCTTGCG-GATTTGGATGTATGG 31941
|||||||||| || || || |||| || |||| ||| | || ||||||
Sbjct 991 AAGGCTGGGCAAAAGTC----ACCGCTGGAATGGGAAGATTGCTTGATCTCGACGTATGG 936
Query 31942 GTAGTCGATGC-ATCGCGGTTATCGGTCGAAGAAATACGCTCAATCGCAGAACGGCACAA 32000
| || || || | | | | | || | || | || ||| | ||||| ||||| |||||
Sbjct 935 ATTGTGGACGCCAGCAAGATGAACG-TGGAGCAGATCCGCGCCATCGCCGAACGTCACAA 877
Query 32001 ACAGGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGATTGAGAAGCC 32060
| | || || || || |||||| | | || || || ||||||||||| |||||
Sbjct 876 GCGCAACAACCCGGCACTATCGCTCATCCTTGTTGACTACCTCGGCCTGATTGACAAGCC 817
Query 32061 GAAAGCAGACCGCAACGACCTCGCAATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGC 32120
|| ||||||||||||||||| || || || |||||||| || ||||||||| |||||
Sbjct 816 AAAGGCAGACCGCAACGACCTGGCGATCGCGCACATCTCCGGCAGCCTGAAGCGCATGGC 757
Query 32121 GAAAGACCTGAAAACGCCTGTTATCTCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCG 32180
||||| || |||||||||||||| || || |||||||| || ||||||||||| |||||
Sbjct 756 AAAAGATCTCAAAACGCCTGTTATGTCGCTTAGTCAGCTATCCCGCGATGTTGAAAAGCG 697
Query 32181 ACCAA----ACA--AACGCCCGACAAACGCAGATTTGCGTGATTCAGGAAGCATTGAACA 32234
|| | ||| || ||||| ||||| ||| |||| || || ||||||||||| ||
Sbjct 696 CCCGAAAGGACAGCGCCGACCGACCAACGCCGATCTGCGCGACTCGGGAAGCATTGAGCA 637
Query 32235 GGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGACG-AGAA-CAGTAGC 32292
|||||| ||| |||||||||||||| || ||||| || ||||||| |||| | |
Sbjct 636 GGACGCCGACAGCATCATCATGCTCTACCGCGAAGCTGTGTATGACGAAGAATCCCCA-- 579
Query 32293 GCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTGGTACGGTT 32352
|| ||| || || ||||||||||| || |||||||| || || ||| || || ||
Sbjct 578 GCTGCGAAGTTGGCAGAAATCATCGTCACCAAAAACCGCTTCGGGCAGCTCGGCACTGTC 519
Query 32353 TACCAGCGGTTCTGTAACGGACACTTTGTTGCATGTGACCAGGATGAAGC 32402
|||||| ||| |||||| || ||| || |||||||| |||||
Sbjct 518 TACCAGGCTTTCAATAACGGGCATTTTCAGCCAACGGACCAGGAAGAAGC 469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128337927629450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |