Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019914.1 Length=40071 Score E Sequences producing significant alignments: (Bits) Value seq2740 123 6e-24 >seq2740 Length=4841 Score = 123 bits (136), Expect = 6e-24 Identities = 198/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 33634 TGTTTGGTTATGGAAGAAAGATACTTATTTTCGTCATAATTGTTGTATCTAACGTAATAG 33693 ||||||||| || ||||| || | || || || || ||| || || |||| | |||| Sbjct 1459 TGTTTGGTT-TGCGAGAAAAATGATGATATTTGT-ATTATTATTTTAGCTAATATTATAG 1402 Query 33694 ATCAGATACTAGCTTTAAATGGTGGACTAATTATGATTACAATCTTATTTTATATCGCAA 33753 |||| ||||| | ||||||||||||| | ||||||||| | | | ||| | |||| Sbjct 1401 ATCAAATACTTGAGCTAAATGGTGGACTGTTAATGATTACATTACTTTATTACTTAGCAA 1342 Query 33754 ATGAGGCTTTATCTGTAGTTGAGAATTGTGCTGCTATGGGCGTACTAGTACCTAAACAAT 33813 |||| | ||| | || || ||||| |||| ||||| ||| |||| ||||| || Sbjct 1341 ATGAAGGATTAAGCATTGTAGAAAATTGCGCTGAAATGGGTGTATTAGTTCCTAAGGAAA 1282 Query 33814 TAGCTGAAAGATTAGCAGTTATAAAAAATGAAGGAAGTCAACCACCTTCAATTACCACTG 33873 | ||||||| | | |||||| |||| ||| | || | || |||| || | | Sbjct 1281 TTGCTGAAAAACTTCAAGTTATTAAAAGTGATAAAGGT--TCAACAGTCAA--ACAA--G 1228 Query 33874 AAATAAAAGAAGAAATGACAACAAAATATAATAAAGAAC 33912 |||| ||||||||| | ||||| ||| ||||||| |||| Sbjct 1227 AAATTAAAGAAGAATTTACAACTAAACATAATAAGGAAC 1189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128069203998050