Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq1477 203 8e-48 seq16612 107 5e-19 >seq1477 Length=14545 Score = 203 bits (224), Expect = 8e-48 Identities = 463/691 (67%), Gaps = 7/691 (1%) Strand=Plus/Minus Query 36485 CGGCGACAGCATTTCCCGCTTCATCTGCCACGCCTGCTGGATACCCTGCCCCGCAAAATA 36544 ||| |||| ||||||||||||||| |||||| | ||| | ||||| || || || | Sbjct 14202 CGGAGACAACATTTCCCGCTTCATTGCCCACGCTTTCTGAGTGCCCTGTCCTGCGAACCA 14143 Query 36545 GAGCGTTCCCCTGCCCTG-CTGGTTGAGTCTGTCCATCAGTGACATCAGCGCCTCGCTGT 36603 || ||||||| ||| |||||| || | || | | ||||||||||||||| | Sbjct 14142 TAGT-TTCCCCTTCCCGCTCTGGTTAAGGCCATCTACAACGCGCATCAGCGCCTCGCTAT 14084 Query 36604 TCGCGCGCGGCGCGTTCTCGTCAAACAGGTTCAGCTGCGCCACGCCCTGGCTGAAAAAGT 36663 | || | || || ||||| || || || || || | ||| ||||| ||||| || | Sbjct 14083 TAGCCTGTGGTTTGTGTTCGTCGAAAAGATTGAGTTGTGACACCCCCTGACTGAAGAAAT 14024 Query 36664 CACCCAGCATAACGCCCGCCTTCTGGTACCGGTGGCCGTCGCGCCAGACCGCATCAAGGC 36723 | || |||||||| || || ||| || || | ||| |||||| ||| || Sbjct 14023 CGCCAAGCATAACCCCTGCTTTCATATAGCGCCGATTATCGAGCCAGATGCGATCCAGCA 13964 Query 36724 AGCCCGTCGCCGCGGCGATAATGTCGCGCGTGTCCTGTGTGGGCGTCAGGAGCTTAGTCC 36783 || | || | ||| |||||||| ||||| | | || |||| | ||| | Sbjct 13963 TTTCCATGGCAACCCGGATGATGTCGCGGGTGTCATTGGATGGAGTCATCAAATTACCCA 13904 Query 36784 CGGCGTGGTTGCCGTAATACGGTTCAG---CAGAGAACGGCGACGTTTTCACGAACACCG 36840 || || || |||||||| |||| | | ||| ||| ||||| |||| Sbjct 13903 TCGCCTGATTACCGTAATAGATTTCATTTTCTGCATGCGGGCTGGTTCGGACGAATACCG 13844 Query 36841 AAATGTACCGGCAGAACTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGC 36900 | | |||||||||||| | |||||||| | ||| || || || ||| | ||||| Sbjct 13843 CTACCTGTCGGCAGAACTGACGTTCGCCGCGTAACTTCTCAGCGGCACGCTCCGCATAAG 13784 Query 36901 TGCAGATAGCCTGGCGCATCGCTTCATAGTCAGTGATTCGCTCCCCGAATGACCGGCTGC 36960 ||||| ||||||||||| | || ||||| || || || ||||||||| | Sbjct 13783 CACAGATGGCCTGGCGCATTTCCATGTACTCAGTAATGCGTGAACCAAATGACCGGGAAC 13724 Query 36961 AGACGATTTCCTGTTTTGCCGGGGCAAACTCCTCGATCTCCAGACAGGGCTCGCCGCGCA 37020 |||| || | ||| || | ||| || |||||||| ||||| || || ||||||| |||| Sbjct 13723 AGACTATCTGCTGCTTGGTCGGCGCGAACTCCTCTATCTCAAGGCATTGCTCGCCACGCA 13664 Query 37021 GCTCGCGCACGGTGCGCTCCAGCACGACGTTAAAGTGTTTGCGGAT-AAAGCGGATGTCG 37079 ||||||||| || | ||| ||||| || || ||||| |||||||| | | | || Sbjct 13663 ACTCGCGCACAGTTCTCTCAAGCACCACATTGAAGTGCTTGCGGATGATATAAGTACTCT 13604 Query 37080 GTATCACAGAGCTGCAGTGCATTTTTAATACTCATTGCCTCCAGCTTTCTGGCAATACGC 37139 | ||| | || | || | | || | ||| || | |||||| || || ||| Sbjct 13603 G-CTCAGACAGGTCTTTGGCCGTAATGATGCCCATAGCATTCAGCTTCTTGCTGATTCGC 13545 Query 37140 CGGCCGACGCCCCAGACTTCCTCCACCGGCA 37170 ||||| |||||||| || || || ||||||| Sbjct 13544 CGGCCAACGCCCCAAACGTCTTCTACCGGCA 13514 >seq16612 Length=1549 Score = 107 bits (118), Expect = 5e-19 Identities = 323/492 (66%), Gaps = 15/492 (3%) Strand=Plus/Minus Query 36446 CCGTACAATCGGCACATCAGCCAGCCGTGTCGTATAACACGGCGACAGCATTTCCCGCTT 36505 |||||| | ||||| ||| || | |||||||||| | || |||| ||| || ||||| Sbjct 487 CCGTACCACCGGCAAATCCGCATACTTTGTCGTATAAGATGGGGACAACATCTCACGCTT 428 Query 36506 CATCTGCCACGCCTGCTGGATACCCTGCCCCGCAAAATAGAGCGTTCCCCTGCCCTGC-T 36564 |||| ||| || | || ||| |||||||| ||||| ||| ||||| | ||| | | Sbjct 427 CATCGACCAGGCTTTCTCGATCCCCTGCCCGGCAAACCAGATT-TTCCCTTTCCCGGAAT 369 Query 36565 GGTTGAGTCTGTCCATCAGTGACATCAGCGCCTCGCTGTTCGCGCGCGGCGCGTTCTCGT 36624 | || | || || ||| ||||| ||| ||| || || || || ||| || | Sbjct 368 GATTAAACCTATCTATCGCCTCCATCAATGCCATGCTATTGGCACGTGGGCGGTTGTCAT 309 Query 36625 CAAACAGGTTCAGCTGCGCCACGCCCTGGCTGAAAAAGTCACCCAGCATAACGCCCGCCT 36684 | |||| || ||||| || || || ||||||||||| ||||||| || ||||| | Sbjct 308 CGAACAAATTAAGCTGTGCGACCCCGCTACTGAAAAAGTCTGCCAGCATCACCCCCGCTT 249 Query 36685 TCTGGTACCGGTGGCCGTCGCGCCAGA-CCGCATCAAGGCAGCCCGTCGCCGCGGCGATA 36743 || || || | || || |||| | |||| || || ||| || ||| |||| Sbjct 248 TCATATAGCGATATCCATCAAGCCATATCCGCTCTAACGC-TTGCGTGGCGGCGCGGATA 190 Query 36744 ATGTCGCGCGTGTCCTGTGTGGGCGTCAGGAGCTTAGTCCCGGCGTGGTTGCCGTAATAC 36803 || ||||| | ||| | | ||||||| || | || || |||||||||||| Sbjct 189 ATATCGCGTGAGTCGTTGCTCGGCGTCATCAGGGTGACAGAAGCCTGATTGCCGTAATAC 130 Query 36804 GGTTCA------GCA-GAGAACGGCGACGTTTTCACGAACACCGAAATGTACCGGCAGAA 36856 ||| ||| ||| || | || || || || ||| | || || | Sbjct 129 ACCTCATTATCCGCATGAGGACTG----GTCCGCAGAAATACGCTGATGAAGCGACAATA 74 Query 36857 CTGATGCTCGCCGCGGAGCTTTTCCGCCGCGCGCGCTGCATAGCTGCAGATAGCCTGGCG 36916 ||| ||||||| || || |||||||| ||||| | || || ||| || ||||| | Sbjct 73 CTGGCGCTCGCCACGCAGTTTTTCCGCTGCGCGTTCGGCGTAAGCGCAAATCGCCTGATG 14 Query 36917 CATCGCTTCATA 36928 |||| | |||| Sbjct 13 CATCTCAACATA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124681366787900