Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq276 91.5 1e-13
>seq276
Length=376631
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| ||||| | || || |||||||| || ||| ||| ||||
Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
||| | | | || | || || |||| || |||||||| || | || |||||
Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGGATCCCACCAGATC 241541
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
||||| || | || ||||| || || |||||||||||| ||| | |||| ||||
Sbjct 241542 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATA 241601
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
| ||||| |||||||| || || ||| | |||
Sbjct 241602 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241633
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| ||||| | || || |||||||| || ||| ||| | ||
Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
||| | | | || | || || |||| || |||||||| ||| | || |||||
Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGATC 240857
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
||||| || | || ||||| || || |||||||||||| || | |||| ||||
Sbjct 240858 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 240917
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
| ||||| |||||||| || || ||| | |||
Sbjct 240918 ATATTCAGAAAGAATCAACACTTCACTTAGTA 240949
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610
|| |||||||| ||||| ||||| | || || |||||||| || ||| ||| |
Sbjct 240509 AAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCA 240568
Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
||||| | | | || | || || |||| || |||||||| ||| | || |||
Sbjct 240569 TCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGA 240627
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
||||||| || | || ||||| || || |||||||||||| || | |||| ||
Sbjct 240628 TCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTA 240687
Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
||| ||||| |||||||| || || ||| | |||
Sbjct 240688 TAATATTCAGAAAGAATCAACACTTCACTTAGTA 240721
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| ||||| | || || |||||||| || ||| ||| | ||
Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
||| | | | || | || || |||| || |||||||| ||| | || |||||
Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAA-GACAAAGAAGGAATCCCACCAGATC 241085
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
||||| || | || ||||| || || |||||||||||| || | | || ||||
Sbjct 241086 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATA 241145
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
| ||||| |||||||| || || ||| | |||
Sbjct 241146 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241177
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| ||||| | || || |||||||| || ||| ||| | ||
Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
||| | | | || | || || |||| || |||||||| || | || |||||
Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGGATCCCACCAGATC 241313
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
||||| || | || ||||| || || |||||||||||| || | |||| ||||
Sbjct 241314 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 241373
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
| ||||| |||||||| || || ||| | |||
Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425280757942575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |