Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq276 91.5 1e-13 >seq276 Length=376631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| || ||| ||| |||| Sbjct 241423 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 241482 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| | | | || | || || |||| || |||||||| || | || ||||| Sbjct 241483 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGGATCCCACCAGATC 241541 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| || || |||||||||||| ||| | |||| |||| Sbjct 241542 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATA 241601 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | ||||| |||||||| || || ||| | ||| Sbjct 241602 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| || ||| ||| | || Sbjct 240739 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 240798 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| | | | || | || || |||| || |||||||| ||| | || ||||| Sbjct 240799 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGATC 240857 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| || || |||||||||||| || | |||| |||| Sbjct 240858 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 240917 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | ||||| |||||||| || || ||| | ||| Sbjct 240918 ATATTCAGAAAGAATCAACACTTCACTTAGTA 240949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| ||||| ||||| | || || |||||||| || ||| ||| | Sbjct 240509 AAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCA 240568 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| | | | || | || || |||| || |||||||| ||| | || ||| Sbjct 240569 TCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGA 240627 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||||| || | || ||||| || || |||||||||||| || | |||| || Sbjct 240628 TCAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTA 240687 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||| ||||| |||||||| || || ||| | ||| Sbjct 240688 TAATATTCAGAAAGAATCAACACTTCACTTAGTA 240721 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| || ||| ||| | || Sbjct 240967 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241026 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| | | | || | || || |||| || |||||||| ||| | || ||||| Sbjct 241027 AGATTCTATTGAAAATGTGAAAGCGAAAATTCAA-GACAAAGAAGGAATCCCACCAGATC 241085 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| || || |||||||||||| || | | || |||| Sbjct 241086 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATA 241145 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | ||||| |||||||| || || ||| | ||| Sbjct 241146 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241177 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| || ||| ||| | || Sbjct 241195 AATGCAAATCTTTGTGAAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTC 241254 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| | | | || | || || |||| || |||||||| || | || ||||| Sbjct 241255 AGACTCTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGGATCCCACCAGATC 241313 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| || | || ||||| || || |||||||||||| || | |||| |||| Sbjct 241314 AACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATA 241373 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 | ||||| |||||||| || || ||| | ||| Sbjct 241374 ATATTCAGAAAGAATCAACACTTCACTTAGTA 241405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425280757942575