Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq276 140 5e-28 seq485 120 4e-22 seq35 113 7e-20 seq231 96.9 5e-15 >seq276 Length=376631 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | ||||| | ||||||||||| || || || ||||| ||| Sbjct 240509 AAGATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCA 240568 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || |||| ||| |||||| |||||| ||||| |||||||| || || ||||| Sbjct 240569 TCAGACTCTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGAT 240628 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| |||| |||| |||||| ||||| | |||||| | | || ||||| || ||| Sbjct 240629 CAACAGCGATTAATTTTTGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTAT 240688 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| ||||| | || ||||| ||||| Sbjct 240689 AATATTCAGAAAGAATCAACACTTCACTTAGT 240720 >seq485 Length=275053 Score = 120 bits (132), Expect = 4e-22 Identities = 111/140 (79%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 116353 GATATATTTACTTTTATTGATTATAATAACTATGATTTAAAACTCGGAAGCTGGTTTAAA 116412 ||||||||| ||||| |||||||||| ||||||||||| | || | ||||| ||| Sbjct 213387 GATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTGGTTCAAA 213446 Query 116413 GATATA---TGGTTTCCATTGTTTGAACATAAAGATATGTTGATAACTAATGATATTTTA 116469 ||||| || |||||||| |||||| | ||| |||| || |||||||||||||||| | Sbjct 213447 GATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGATATTTCA 213506 Query 116470 TGCTTTATTCATTACGGAAT 116489 |||||| |||||||| || Sbjct 213507 ACCTTTATACATTACGGTAT 213526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 120028 GATATATTTACTTTTATTGATTATAATAACTATGATTTAAAACTCGGAAGCTGGTTTAAA 120087 ||||||||| ||||| |||||||||| ||||||||||| | || | ||||| ||| Sbjct 213387 GATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTGGTTCAAA 213446 Query 120088 GATAT---ATGGTTTCCATTGTTTGAACAGAAAGATGTTATAATAACTAACGAAATATTA 120144 ||||| || |||||||| |||||| ||||| || | |||||||||| || || | | Sbjct 213447 GATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGATATTTCA 213506 Query 120145 AATTTTAT 120152 | ||||| Sbjct 213507 ACCTTTAT 213514 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 118543 TTTATAGATAATAATGATTATGATTTAAAACTCGGAAGCTGGTTTAAAGATATA---TGG 118599 |||||| || ||||| | ||||||||||| | || | ||||| |||||||| || Sbjct 213399 TTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTGGTTCAAAGATATTAATTGC 213458 Query 118600 TTTCCATTGTTTGAACAGAAAGATGTTTTAATTACTAATGATATATTGAATTTTATTCAT 118659 |||||||| |||||| ||||| || | ||||| ||||||||||| | | ||||| ||| Sbjct 213459 TTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGATATTTCAACCTTTATACAT 213518 Query 118660 TATGG 118664 || || Sbjct 213519 TACGG 213523 >seq35 Length=1961283 Score = 113 bits (124), Expect = 7e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 |||||||| || || | || || ||||| ||||| || ||||||| |||||||| || Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACGCGAACGC 18300 | |||||||| | || ||||| | ||| || |||||||| ||||| ||| || || || Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCA-GCAAATGC 1197012 Query 18301 TATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-ATCCATTTTTGTGCCCATTCTC 18359 | ||| |||||| ||||| | |||| | ||| | |||||||| | ||||| ||| Sbjct 1197011 AACTAACCTTTCACCAAAAGTTGCTTTACTA-TCACTGATCCATTTAAGAGCCCAATCTG 1196953 Query 18360 CTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 | | | |||||| || | || ||||||||||| ||| Sbjct 1196952 CCTTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 1196909 >seq231 Length=580210 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || || || || || || | || ||||| | Sbjct 341021 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 340962 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| || ||| ||||| |||||||||||||| || || || || Sbjct 340961 TCAGACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGAT 340902 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | ||||| |||||||| |||||| | || || || |||||| Sbjct 340901 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTAT 340842 Query 156000 AATATATCCAAA 156011 | | ||||||| Sbjct 340841 A--ACATCCAAA 340832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731653124530000