Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq276 174 3e-38 seq35 141 2e-28 seq2302 132 9e-26 seq485 114 2e-20 seq1641 107 3e-18 seq1042 96.9 6e-15 seq231 95.1 2e-14 seq1336 93.3 8e-14 seq1265 91.5 3e-13 >seq276 Length=376631 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | |||||| || | || | ||||| ||||||||| || Sbjct 240969 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240910 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||| || || ||||||||||||| |||||| || ||| Sbjct 240909 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240850 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| ||| ||||| |||| |||||||||||| Sbjct 240849 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 240790 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| |||||||| ||||| | ||||| | || || |||||| Sbjct 240789 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | |||||| || | || | ||||| ||||||||| || Sbjct 241197 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCA 241138 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||| || || ||||||||||||| |||||| || ||| Sbjct 241137 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241078 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| ||| ||||| |||| ||||||||||||| Sbjct 241077 GGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCT 241018 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| |||||||| ||||| | ||||| | || || |||||| Sbjct 241017 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | |||||| || | || | ||||| ||||||||| || Sbjct 240741 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240682 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||| || || ||||||||||||| |||||| || ||| Sbjct 240681 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240622 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| ||| ||||| |||| ||||| |||||| Sbjct 240621 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCT 240562 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| |||||||| ||||| | ||||| | || || ||||| || Sbjct 240561 ACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTT 240509 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | |||||| || | || | ||||| ||||||||| || Sbjct 241425 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241366 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || |||||||| || || ||||||||||||| |||||| || ||| Sbjct 241365 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241306 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| |||| |||||||||||| Sbjct 241305 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 241246 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| |||||||| ||||| | ||||| | || || |||||| Sbjct 241245 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241195 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | |||||| || | || | ||||| ||||||||| || Sbjct 241653 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241594 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || | || |||||||| || || ||||||||||||| |||||| || ||| Sbjct 241593 GATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241534 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| |||| ||||| |||||| Sbjct 241533 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCT 241474 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| |||||||| ||||| | ||||| | || || |||||| Sbjct 241473 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241423 >seq35 Length=1961283 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || || || || || | ||||| ||||||||||| ||||||||||||||||| || || Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | |||||||| || |||||||| | ||| || |||||||| || || |||||||| Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011 Query 39270 ATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCt 39329 | || ||| | ||||| || |||| ||| ||||| || | ||||||||||| Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951 Query 39330 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 || ||||| | | | || || |||| ||||| |||||||| Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAA 1196910 >seq2302 Length=121279 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || ||||| || | |||| ||||| || || || || Sbjct 54329 ATACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 54388 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | ||| || || ||||| || || | |||||||||||| Sbjct 54389 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGT 54448 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| ||||||||| || | |||||| || || Sbjct 54449 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCA 54508 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| || ||||||||||| || ||||| | || |||||||| || Sbjct 54509 ACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561 >seq485 Length=275053 Score = 114 bits (126), Expect = 2e-20 Identities = 103/129 (80%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 206390 TATAAATGATAAAATATCATTAGTTATTAATATATCTTTCTCTTCAAATAGTGGATACCA 206449 |||||| | | |||||||||||||||||||||||| |||||||||||||| |||| | || Sbjct 213515 TATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCA 213456 Query 206450 ---TATATCTTTAAACCATGATCCTAAATTAATATTATAATCATTATATTTTATAAAAGT 206506 |||||||| ||||| |||| ||| | || ||| | |||||| |||||||| Sbjct 213455 ATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTTATAAATTC 213396 Query 206507 AAATATATC 206515 ||||||||| Sbjct 213395 AAATATATC 213387 Score = 107 bits (118), Expect = 3e-18 Identities = 108/140 (77%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 53323 ATTCCATAATGAATAAAGCATAAAATATCATTAGTTATCAATACATCTTTCTTTTCGAAC 53382 || || ||||| |||||| | |||||||||||||||| |||| || ||||| ||| || Sbjct 213526 ATACCGTAATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAAT 213467 Query 53383 AAAGGAAACCA---TATGTCTTTAAACCATTTGCCTAATTTTAAATCGTAATTATTTCTA 53439 || ||||| || || ||||| ||||| ||||||| |||||||| || ||||| | Sbjct 213466 AATGGAAAGCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAA 213407 Query 53440 TTCATAAATGTGAATATATC 53459 || |||||| |||||||| Sbjct 213406 TTTATAAATTCAAATATATC 213387 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/119 (80%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 260771 AAATTTCATTTGTTATCAATATATTTTTCTTCTCAAACAAGGGATACCAT---ATATCTT 260827 |||| ||||| ||||| ||||||||||||| ||||| || ||| | || ||||||| Sbjct 213504 AAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCAATTAATATCTT 213445 Query 260828 TGAACCAATCGCCTA-ATTTAAACTCATAATTATTATTTTCAATAAAAGTAAATATATC 260885 ||||||||| ||||| ||||||| ||||| ||||||| | ||||| ||||||||| Sbjct 213444 TGAACCAATTGCCTACATTTAAA-TCATATTTATTATAATTTATAAATTCAAATATATC 213387 Score = 89.7 bits (98), Expect = 9e-13 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 211711 ATATATAAAATTAAAAATTTCATTAGTTATAATTATATCTTTCTGTTCAAATAACGGATA 211770 || |||||| | |||| ||||||||||| | ||||| ||||| ||||||||| ||| | Sbjct 213518 ATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAA 213459 Query 211771 CCA---AATATCAGTAAACCAATCACCTAATTTAAAATCATAGTTATTATTATTT 211822 || |||||| | ||||||| |||| || |||||||| ||||||| |||| Sbjct 213458 GCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTT 213404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 15531 ATTATTA-ATATTTTTGAATTTATAAATCAAAATAACTATAATTTAGTATTGGGTACTTG 15589 ||| ||| |||| ||||||||||||||| | ||||| ||| ||||| | || | ||| Sbjct 213380 ATTTTTAGATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTG 213439 Query 15590 GTTTAAAGATAT---ATGGTATCCGTTATTTAATCAAAAAGATATATTAATCACTAACAA 15646 ||| |||||||| || | ||| |||||| | | ||| |||||||||| ||||| | Sbjct 213440 GTTCAAAGATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGA 213499 Query 15647 TATATTATCATTTAT 15661 ||| | | | ||||| Sbjct 213500 TATTTCAACCTTTAT 213514 >seq1641 Length=9691 Score = 107 bits (118), Expect = 3e-18 Identities = 175/244 (72%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 49530 TCCATCTTTTTAAATGTATAGTATGCGGATTAGATTCtttt---atatcattttgtatat 49586 ||||| |||||||||||| || | ||| ||||| ||| |||| ||||||||||| Sbjct 5489 TCCATTTTTTTAAATGTAACGTTCTTGAATTTGATTCGTTTTTAATATAATTTTGTATAT 5430 Query 49587 attcata-taattttattttatcatttttataatctatgtgttcgtattctatgttattt 49645 ||||||| | ||| ||||| | |||||||||||| || ||||| ||| || | ||| Sbjct 5429 ATTCATAATCATTACATTTTTT-ATTTTTATAATCAATTTGTTCAAATTTAATTTCATTG 5371 Query 49646 tcttttaGAAATTCTATAAA--TCTTCtttttttATCTCTTAATGACACATGGCAAACTT 49703 | |||| |||||||||||| | | | |||||| ||| | | || | | || || Sbjct 5370 TTATTTAAAAATTCTATAAAATTATGCATTTTTT-TCTATATTTAACGCGTCCGTAAATT 5312 Query 49704 TGCCACTAGTCA-GATTATCAACAAAACCCATAAATTCTAATATATTTTCAG-TAATTAA 49761 || || | | ||||| ||| ||||||||||| |||| ||| |||| | |||| Sbjct 5311 ACGGACGTGTTATTAATATCACAAAATCCCATAAATTCCAATAAATTCTCAGTTGGTTAA 5252 Query 49762 TATT 49765 |||| Sbjct 5251 TATT 5248 >seq1042 Length=111944 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39168 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 39227 || || ||||||||||| ||| ||||||||||||| || | | ||| |||||| | | Sbjct 80238 TCGTTGCTAAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTCAACCATGTTATTGAAGGA 80297 Query 39228 AAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAAC 39287 | | | | ||| || |||||||| | ||| ||||||| | || ||| | ||||| Sbjct 80298 ACATTTCCAGATAAAAATATACCTTTAACAGCAGCAAATGTCACTAACCTTTCACCAAAA 80357 Query 39288 ATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGT 39347 || |||| ||| |||||| || | |||||||||| ||||||| | | | || Sbjct 80358 GTTGCTTTACTATCAGTAATCCATTTAAGAACCCAATCTGCCATTTTTTTTACACATGGC 80417 Query 39348 ATATTTTCTATAGCTTTAAATAA 39370 || |||| |||| |||| ||| Sbjct 80418 ATGGTTTCAGTAGCATTAATTAA 80440 >seq231 Length=580210 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| || || | ||| | || || | || || || || || || || | Sbjct 340837 ATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAACGT 340896 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || |||||||||||||| ||||| ||| ||||| ||||| Sbjct 340897 TGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATAGTG 340956 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || || || || ||||| || || || | ||||| | ||| || ||| Sbjct 340957 TCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATTTGC 341016 Query 172068 ATTTT 172072 || || Sbjct 341017 ATGTT 341021 >seq1336 Length=246805 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 171958 GTGGTATT--CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 || ||||| |||||||||||||| ||||| ||| ||||| || | ||| ||||| Sbjct 246378 GTAGTATTTACCTTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGACGA 246319 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 |||||||| ||||| || ||||| ||||| || || || | ||| ||||||||||| | Sbjct 246318 CTCTACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTTGCT 246259 Query 172076 ATAAA 172080 | ||| Sbjct 246258 AAAAA 246254 >seq1265 Length=163832 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| |||||| ||||||||| |||| |||||| || || || || Sbjct 83973 CCTTCTTTATCTTGAATTTTAGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 83914 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT--ATTATAAAAA 172082 |||||||| |||||||| || | ||||||| || || ||||| || |||||||| Sbjct 83913 AGAGTAATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTTGCCCTATAAAAA 83855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904865307765000