Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq276 174 3e-38
seq35 141 2e-28
seq2302 132 9e-26
seq485 114 2e-20
seq1641 107 3e-18
seq1042 96.9 6e-15
seq231 95.1 2e-14
seq1336 93.3 8e-14
seq1265 91.5 3e-13
>seq276
Length=376631
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| ||| || | |||||| || | || | ||||| ||||||||| ||
Sbjct 240969 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240910
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || |||||||| || || ||||||||||||| |||||| || |||
Sbjct 240909 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240850
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| |||||| ||| ||||| |||| ||||||||||||
Sbjct 240849 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 240790
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| |||||||| ||||| | ||||| | || || ||||||
Sbjct 240789 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240739
Score = 174 bits (192), Expect = 3e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| ||| || | |||||| || | || | ||||| ||||||||| ||
Sbjct 241197 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCA 241138
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || |||||||| || || ||||||||||||| |||||| || |||
Sbjct 241137 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241078
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| ||||| ||| ||||| |||| |||||||||||||
Sbjct 241077 GGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCT 241018
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| |||||||| ||||| | ||||| | || || ||||||
Sbjct 241017 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 240967
Score = 168 bits (186), Expect = 1e-36
Identities = 177/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| ||| || | |||||| || | || | ||||| ||||||||| ||
Sbjct 240741 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 240682
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || |||||||| || || ||||||||||||| |||||| || |||
Sbjct 240681 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 240622
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| |||||| ||| ||||| |||| ||||| ||||||
Sbjct 240621 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCT 240562
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | ||| |||||||| ||||| | ||||| | || || ||||| ||
Sbjct 240561 ACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATCTT 240509
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| ||| || | |||||| || | || | ||||| ||||||||| ||
Sbjct 241425 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241366
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || |||||||| || || ||||||||||||| |||||| || |||
Sbjct 241365 GATAACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241306
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| |||||| ||| ||||| |||| ||||||||||||
Sbjct 241305 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCT 241246
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| |||||||| ||||| | ||||| | || || ||||||
Sbjct 241245 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241195
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||||| ||| || | |||||| || | || | ||||| ||||||||| ||
Sbjct 241653 ATTCCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCG 241594
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||||| || | || |||||||| || || ||||||||||||| |||||| || |||
Sbjct 241593 GATAAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGT 241534
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| |||||| ||| ||||| |||| ||||| ||||||
Sbjct 241533 GGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCT 241474
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| |||||||| ||||| | ||||| | || || ||||||
Sbjct 241473 ACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCATT 241423
>seq35
Length=1961283
Score = 141 bits (156), Expect = 2e-28
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209
|| || || || || | ||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 1197130 TCATCTCTTGAAATCAGCTCATTGCTAAAAGTTAAACCTGGCATTAATCCTCTTTTCTTC 1197071
Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269
| |||||||| || |||||||| | ||| || |||||||| || || ||||||||
Sbjct 1197070 AACCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACTGCAGCAAATGCA 1197011
Query 39270 ATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCt 39329
| || ||| | ||||| || |||| ||| ||||| || | |||||||||||
Sbjct 1197010 ACTAACCTTTCACCAAAAGTTGCTTTACTATCACTGATCCATTTAAGAGCCCAATCTGCC 1196951
Query 39330 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370
|| ||||| | | | || || |||| ||||| ||||||||
Sbjct 1196950 TTCTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAA 1196910
>seq2302
Length=121279
Score = 132 bits (146), Expect = 9e-26
Identities = 169/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || || ||||| || | |||| ||||| || || || ||
Sbjct 54329 ATACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCA 54388
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | ||| |||| || | ||| || || ||||| || || | ||||||||||||
Sbjct 54389 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGT 54448
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || ||| ||||||||| || | |||||| || ||
Sbjct 54449 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCA 54508
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| | ||| || ||||||||||| || ||||| | || |||||||| ||
Sbjct 54509 ACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 54561
>seq485
Length=275053
Score = 114 bits (126), Expect = 2e-20
Identities = 103/129 (80%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 206390 TATAAATGATAAAATATCATTAGTTATTAATATATCTTTCTCTTCAAATAGTGGATACCA 206449
|||||| | | |||||||||||||||||||||||| |||||||||||||| |||| | ||
Sbjct 213515 TATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCA 213456
Query 206450 ---TATATCTTTAAACCATGATCCTAAATTAATATTATAATCATTATATTTTATAAAAGT 206506
|||||||| ||||| |||| ||| | || ||| | |||||| ||||||||
Sbjct 213455 ATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTTATAAATTC 213396
Query 206507 AAATATATC 206515
|||||||||
Sbjct 213395 AAATATATC 213387
Score = 107 bits (118), Expect = 3e-18
Identities = 108/140 (77%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 53323 ATTCCATAATGAATAAAGCATAAAATATCATTAGTTATCAATACATCTTTCTTTTCGAAC 53382
|| || ||||| |||||| | |||||||||||||||| |||| || ||||| ||| ||
Sbjct 213526 ATACCGTAATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAAT 213467
Query 53383 AAAGGAAACCA---TATGTCTTTAAACCATTTGCCTAATTTTAAATCGTAATTATTTCTA 53439
|| ||||| || || ||||| ||||| ||||||| |||||||| || ||||| |
Sbjct 213466 AATGGAAAGCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAA 213407
Query 53440 TTCATAAATGTGAATATATC 53459
|| |||||| ||||||||
Sbjct 213406 TTTATAAATTCAAATATATC 213387
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/119 (80%), Gaps = 5/119 (4%)
Strand=Plus/Minus
Query 260771 AAATTTCATTTGTTATCAATATATTTTTCTTCTCAAACAAGGGATACCAT---ATATCTT 260827
|||| ||||| ||||| ||||||||||||| ||||| || ||| | || |||||||
Sbjct 213504 AAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAAGCAATTAATATCTT 213445
Query 260828 TGAACCAATCGCCTA-ATTTAAACTCATAATTATTATTTTCAATAAAAGTAAATATATC 260885
||||||||| ||||| ||||||| ||||| ||||||| | ||||| |||||||||
Sbjct 213444 TGAACCAATTGCCTACATTTAAA-TCATATTTATTATAATTTATAAATTCAAATATATC 213387
Score = 89.7 bits (98), Expect = 9e-13
Identities = 89/115 (77%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 211711 ATATATAAAATTAAAAATTTCATTAGTTATAATTATATCTTTCTGTTCAAATAACGGATA 211770
|| |||||| | |||| ||||||||||| | ||||| ||||| ||||||||| ||| |
Sbjct 213518 ATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCAAATAATGGAAA 213459
Query 211771 CCA---AATATCAGTAAACCAATCACCTAATTTAAAATCATAGTTATTATTATTT 211822
|| |||||| | ||||||| |||| || |||||||| ||||||| ||||
Sbjct 213458 GCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTATAATTT 213404
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/135 (75%), Gaps = 4/135 (3%)
Strand=Plus/Plus
Query 15531 ATTATTA-ATATTTTTGAATTTATAAATCAAAATAACTATAATTTAGTATTGGGTACTTG 15589
||| ||| |||| ||||||||||||||| | ||||| ||| ||||| | || | |||
Sbjct 213380 ATTTTTAGATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTG 213439
Query 15590 GTTTAAAGATAT---ATGGTATCCGTTATTTAATCAAAAAGATATATTAATCACTAACAA 15646
||| |||||||| || | ||| |||||| | | ||| |||||||||| ||||| |
Sbjct 213440 GTTCAAAGATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGA 213499
Query 15647 TATATTATCATTTAT 15661
||| | | | |||||
Sbjct 213500 TATTTCAACCTTTAT 213514
>seq1641
Length=9691
Score = 107 bits (118), Expect = 3e-18
Identities = 175/244 (72%), Gaps = 10/244 (4%)
Strand=Plus/Minus
Query 49530 TCCATCTTTTTAAATGTATAGTATGCGGATTAGATTCtttt---atatcattttgtatat 49586
||||| |||||||||||| || | ||| ||||| ||| |||| |||||||||||
Sbjct 5489 TCCATTTTTTTAAATGTAACGTTCTTGAATTTGATTCGTTTTTAATATAATTTTGTATAT 5430
Query 49587 attcata-taattttattttatcatttttataatctatgtgttcgtattctatgttattt 49645
||||||| | ||| ||||| | |||||||||||| || ||||| ||| || | |||
Sbjct 5429 ATTCATAATCATTACATTTTTT-ATTTTTATAATCAATTTGTTCAAATTTAATTTCATTG 5371
Query 49646 tcttttaGAAATTCTATAAA--TCTTCtttttttATCTCTTAATGACACATGGCAAACTT 49703
| |||| |||||||||||| | | | |||||| ||| | | || | | || ||
Sbjct 5370 TTATTTAAAAATTCTATAAAATTATGCATTTTTT-TCTATATTTAACGCGTCCGTAAATT 5312
Query 49704 TGCCACTAGTCA-GATTATCAACAAAACCCATAAATTCTAATATATTTTCAG-TAATTAA 49761
|| || | | ||||| ||| ||||||||||| |||| ||| |||| | ||||
Sbjct 5311 ACGGACGTGTTATTAATATCACAAAATCCCATAAATTCCAATAAATTCTCAGTTGGTTAA 5252
Query 49762 TATT 49765
||||
Sbjct 5251 TATT 5248
>seq1042
Length=111944
Score = 96.9 bits (106), Expect = 6e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 39168 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 39227
|| || ||||||||||| ||| ||||||||||||| || | | ||| |||||| | |
Sbjct 80238 TCGTTGCTAAAAGTTAAGCCTAGCATTAATCCTCTTTTCGTCAACCATGTTATTGAAGGA 80297
Query 39228 AAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAAC 39287
| | | | ||| || |||||||| | ||| ||||||| | || ||| | |||||
Sbjct 80298 ACATTTCCAGATAAAAATATACCTTTAACAGCAGCAAATGTCACTAACCTTTCACCAAAA 80357
Query 39288 ATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGT 39347
|| |||| ||| |||||| || | |||||||||| ||||||| | | | ||
Sbjct 80358 GTTGCTTTACTATCAGTAATCCATTTAAGAACCCAATCTGCCATTTTTTTTACACATGGC 80417
Query 39348 ATATTTTCTATAGCTTTAAATAA 39370
|| |||| |||| |||| |||
Sbjct 80418 ATGGTTTCAGTAGCATTAATTAA 80440
>seq231
Length=580210
Score = 95.1 bits (104), Expect = 2e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| |||||||| || || | ||| | || || | || || || || || || || |
Sbjct 340837 ATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAACGT 340896
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| || ||||| || |||||||||||||| ||||| ||| ||||| |||||
Sbjct 340897 TGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATAGTG 340956
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
||||| || || || || || || ||||| || || || | ||||| | ||| || |||
Sbjct 340957 TCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATTTGC 341016
Query 172068 ATTTT 172072
|| ||
Sbjct 341017 ATGTT 341021
>seq1336
Length=246805
Score = 93.3 bits (102), Expect = 8e-14
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 171958 GTGGTATT--CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015
|| ||||| |||||||||||||| ||||| ||| ||||| || | ||| |||||
Sbjct 246378 GTAGTATTTACCTTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGACGA 246319
Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075
|||||||| ||||| || ||||| ||||| || || || | ||| ||||||||||| |
Sbjct 246318 CTCTACTTCGAGAGTGATCGTTTTCCCAGTCAACGTCTTCACGAAGATCTGCATTTTGCT 246259
Query 172076 ATAAA 172080
| |||
Sbjct 246258 AAAAA 246254
>seq1265
Length=163832
Score = 91.5 bits (100), Expect = 3e-13
Identities = 92/119 (77%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025
|||||||||||||| |||||| ||||||||| |||| |||||| || || || ||
Sbjct 83973 CCTTCTTTATCTTGAATTTTAGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 83914
Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT--ATTATAAAAA 172082
|||||||| |||||||| || | ||||||| || || ||||| || ||||||||
Sbjct 83913 AGAGTAATTGTTTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTTGCCCTATAAAAA 83855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904865307765000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |