Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1251 102 2e-16 seq757 84.2 6e-11 >seq1251 Length=197257 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||||| ||||||||||||||||| ||||| || | | ||| |||| || || | Sbjct 9293 CTTTTTTTTCCAACAGCATCAATTTCATCAATAAATAATATACATGGAGCATGTTTACGA 9234 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| || | ||||| || | |||| ||||| ||||||| ||||||||| ||| Sbjct 9233 GCCATTGTGAACATATCTCTGACTCTAGATGGTCCAACACCAACAAACATTTCTAAAAAC 9174 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | || || | || | |||| |||||| || || ||| | || || Sbjct 9173 TCTGAACCAGAAACGGATAAAAACGGAACATCTGCTTCACCAGCCGTTGCTTTTGCGAGT 9114 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || ||||| || || || ||||| Sbjct 9113 AACGTTTTACCAGTACCCGGAGGTCC 9088 >seq757 Length=226151 Score = 84.2 bits (92), Expect = 6e-11 Identities = 125/174 (72%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 106917 ACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAA---TTAACTTAC 106973 |||||||||||||||| || || || | || | |||| | | || |||||| | Sbjct 172684 ACGAACTCATACCATAAAATAATTTACATTTAGTGCCATTTGGTTTAATGGTTAACTCGC 172743 Query 106974 CTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCAC 107033 || ||||| ||| ||||| |||| | || |||| ||| || ||||| || || ||| Sbjct 172744 CTCCATTTTGATCATGTCCAGCAAGCATTCCACCAAGCATAACAAAATCTGCTCCAGCAC 172803 Query 107034 CGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATAT 107087 | ||||| || || | ||| ||||| ||| | ||||||||| || ||||||| Sbjct 172804 CAAATGCCTTGGCAACATCTCCAGGACAAACACATCCACCATC-CT-ATAATAT 172855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471366430412725