Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq368 111 2e-18
seq31 105 8e-17
seq1982 91.5 2e-12
seq4148 87.8 2e-11
seq1976 86.0 8e-11
>seq368
Length=290577
Score = 111 bits (122), Expect = 2e-18
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| ||| ||| ||| | || || ||||| ||||||||||| || ||
Sbjct 115597 GCTTGGCCAATTCACCGGGCAACAAAAGCCGGACGGCCGTCTGGATCTCTTTACTGGAGA 115538
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| | |||||||| | || ||||||||| |||||| || ||||||| |||| |
Sbjct 115537 TCGTCCTACGCTTGTTGTATTGGGCCAGACGGTTAGCCTCGCTGGCGATGCGCTCGAAAA 115478
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||| || |||||||| ||| | ||| ||||||| ||||| |
Sbjct 115477 GGTCGTTGACGAAGCTGTTCATGATACTCATGGCCTTTGACGAGATGCTGGTATCGGGAT 115418
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
|||| || || ||||| |||||||||
Sbjct 115417 GCACTTGTTTCAGCACTTTGTAGATG 115392
>seq31
Length=1982931
Score = 105 bits (116), Expect = 8e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| |||||| ||| | ||||| |||||||| ||||| || || || ||
Sbjct 1639427 GCTTGGCCAACTCGCCGGGCAACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGA 1639368
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || |||||||| |||| |||| ||| | || |||| |||| || |||| |
Sbjct 1639367 TGGTCGAACGCTTGTTGTAGTGAGCCAAACGACTGGATTCGGAAGCGATACGCTCGAAGA 1639308
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||| |||||||| ||||| ||| ||| | ||| ||| ||||
Sbjct 1639307 GATCGTTGACAAAACTGTTCATGATGCTCATCGCCTTTGAGGAAACGCCGGTGTCTGGGT 1639248
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
|||| ||||| | ||| |||||||||
Sbjct 1639247 GCACTTGCTTCAACACTTTGTAGATG 1639222
>seq1982
Length=85936
Score = 91.5 bits (100), Expect = 2e-12
Identities = 105/136 (77%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 1726697 GCGGCGCGCACGGCGTCGAGTGCCGTCGCCAC-GCTCCCGTCGGTGCCGTTCTTGAAGCC 1726755
|| ||||| | |||||||| || || || | | |||||||||||||| ||||||||
Sbjct 42493 GCCGCGCGAATGGCGTCGA-TGGCGATGCGGGTGTTGCCGTCGGTGCCGTTTTTGAAGCC 42551
Query 1726756 GA-TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCG 1726814
|| || ||| | || ||||| ||||| || ||||| | |||||| ||||| |||||||
Sbjct 42552 GACCGGGCAG-GAGAGCGCCGAGGCCATTTCACGGTGGATCTGGCTTTCGGTGGTGCGCG 42610
Query 1726815 CGCCCACGGCGCCCCA 1726830
| || | |||||||||
Sbjct 42611 CACCGATGGCGCCCCA 42626
>seq4148
Length=43163
Score = 87.8 bits (96), Expect = 2e-11
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 1137869 ACCCACGCGTTGACGGCCTGCGCGC-GCGCCGTGCGCATCGGACGCTCGACGTCGCAAAA 1137927
||||| |||||| |||||||| | ||||| | |||||| |||||||||||||||||
Sbjct 42775 ACCCAGTGGTTGACTGCCTGCGCCCAGCGCCATTT-CATCGGCCGCTCGACGTCGCAAAA 42717
Query 1137928 GAGCACGATCCGCGGCCGGTCGCACAGGTTGCGCACCTCGTGCACGTACGTGTCGTCAAA 1137987
|| | ||| |||| | | ||| ||| || || ||||||||| || ||||| ||
Sbjct 42716 CAGAATGATGCGCGTCTGATCGGTGGCGTTCTGCGCCCAGTGCACGTAGGTCTCGTCGAA 42657
Query 1137988 GAGCATGTGATCGCCCTCGGCCCAGCGGCGGGCCTGGCCGTCGACGACGAGCCGGCAGCG 1138047
|| || ||||| ||| ||||| | | || |||||| || ||| ||||||
Sbjct 42656 GATCACCGCCTCGCCGTCGCGCCAGCTGTGCTGCTCGCCGTCTACTTCGATGAAGCAGCG 42597
Query 1138048 GGCGTCGATGGG 1138059
||||| ||||
Sbjct 42596 ATCGTCGTTGGG 42585
>seq1976
Length=85193
Score = 86.0 bits (94), Expect = 8e-11
Identities = 109/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744
|||||| | |||||||| | |||||||| ||| | | | | ||||||||||||
Sbjct 188 TGCGGCGCGCCGGCGGCGTTGATGGCGTCGATCGCCACCTTGATGGTGCCGTCGGTGCCG 129
Query 1726745 TTCTTGAAGCCGA--TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCT 1726802
||||||||||||| ||| || | || | || |||| || ||||||||||| |
Sbjct 128 TTCTTGAAGCCGACCGGGCAAGAG--AGACCAGAGGCCAGTTCACGGTGCACCTGCGATT 71
Query 1726803 CGGTCGTGCGCGCGCCCACGGCGCCCCA 1726830
| || ||||||||||| | |||||||||
Sbjct 70 CCGTGGTGCGCGCGCCGATGGCGCCCCA 43
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105175802459225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |