Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq368 111 2e-18 seq31 105 8e-17 seq1982 91.5 2e-12 seq4148 87.8 2e-11 seq1976 86.0 8e-11 >seq368 Length=290577 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| | || || ||||| ||||||||||| || || Sbjct 115597 GCTTGGCCAATTCACCGGGCAACAAAAGCCGGACGGCCGTCTGGATCTCTTTACTGGAGA 115538 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| | |||||||| | || ||||||||| |||||| || ||||||| |||| | Sbjct 115537 TCGTCCTACGCTTGTTGTATTGGGCCAGACGGTTAGCCTCGCTGGCGATGCGCTCGAAAA 115478 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||| | ||| ||||||| ||||| | Sbjct 115477 GGTCGTTGACGAAGCTGTTCATGATACTCATGGCCTTTGACGAGATGCTGGTATCGGGAT 115418 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| || || ||||| ||||||||| Sbjct 115417 GCACTTGTTTCAGCACTTTGTAGATG 115392 >seq31 Length=1982931 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | ||||| |||||||| ||||| || || || || Sbjct 1639427 GCTTGGCCAACTCGCCGGGCAACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGA 1639368 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| |||| ||| | || |||| |||| || |||| | Sbjct 1639367 TGGTCGAACGCTTGTTGTAGTGAGCCAAACGACTGGATTCGGAAGCGATACGCTCGAAGA 1639308 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||| |||||||| ||||| ||| ||| | ||| ||| |||| Sbjct 1639307 GATCGTTGACAAAACTGTTCATGATGCTCATCGCCTTTGAGGAAACGCCGGTGTCTGGGT 1639248 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| | ||| ||||||||| Sbjct 1639247 GCACTTGCTTCAACACTTTGTAGATG 1639222 >seq1982 Length=85936 Score = 91.5 bits (100), Expect = 2e-12 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 1726697 GCGGCGCGCACGGCGTCGAGTGCCGTCGCCAC-GCTCCCGTCGGTGCCGTTCTTGAAGCC 1726755 || ||||| | |||||||| || || || | | |||||||||||||| |||||||| Sbjct 42493 GCCGCGCGAATGGCGTCGA-TGGCGATGCGGGTGTTGCCGTCGGTGCCGTTTTTGAAGCC 42551 Query 1726756 GA-TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCG 1726814 || || ||| | || ||||| ||||| || ||||| | |||||| ||||| ||||||| Sbjct 42552 GACCGGGCAG-GAGAGCGCCGAGGCCATTTCACGGTGGATCTGGCTTTCGGTGGTGCGCG 42610 Query 1726815 CGCCCACGGCGCCCCA 1726830 | || | ||||||||| Sbjct 42611 CACCGATGGCGCCCCA 42626 >seq4148 Length=43163 Score = 87.8 bits (96), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 1137869 ACCCACGCGTTGACGGCCTGCGCGC-GCGCCGTGCGCATCGGACGCTCGACGTCGCAAAA 1137927 ||||| |||||| |||||||| | ||||| | |||||| ||||||||||||||||| Sbjct 42775 ACCCAGTGGTTGACTGCCTGCGCCCAGCGCCATTT-CATCGGCCGCTCGACGTCGCAAAA 42717 Query 1137928 GAGCACGATCCGCGGCCGGTCGCACAGGTTGCGCACCTCGTGCACGTACGTGTCGTCAAA 1137987 || | ||| |||| | | ||| ||| || || ||||||||| || ||||| || Sbjct 42716 CAGAATGATGCGCGTCTGATCGGTGGCGTTCTGCGCCCAGTGCACGTAGGTCTCGTCGAA 42657 Query 1137988 GAGCATGTGATCGCCCTCGGCCCAGCGGCGGGCCTGGCCGTCGACGACGAGCCGGCAGCG 1138047 || || ||||| ||| ||||| | | || |||||| || ||| |||||| Sbjct 42656 GATCACCGCCTCGCCGTCGCGCCAGCTGTGCTGCTCGCCGTCTACTTCGATGAAGCAGCG 42597 Query 1138048 GGCGTCGATGGG 1138059 ||||| |||| Sbjct 42596 ATCGTCGTTGGG 42585 >seq1976 Length=85193 Score = 86.0 bits (94), Expect = 8e-11 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 |||||| | |||||||| | |||||||| ||| | | | | |||||||||||| Sbjct 188 TGCGGCGCGCCGGCGGCGTTGATGGCGTCGATCGCCACCTTGATGGTGCCGTCGGTGCCG 129 Query 1726745 TTCTTGAAGCCGA--TGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCT 1726802 ||||||||||||| ||| || | || | || |||| || ||||||||||| | Sbjct 128 TTCTTGAAGCCGACCGGGCAAGAG--AGACCAGAGGCCAGTTCACGGTGCACCTGCGATT 71 Query 1726803 CGGTCGTGCGCGCGCCCACGGCGCCCCA 1726830 | || ||||||||||| | ||||||||| Sbjct 70 CCGTGGTGCGCGCGCCGATGGCGCCCCA 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105175802459225