Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_021901.1
Length=197693
Score E
Sequences producing significant alignments: (Bits) Value
seq890 87.8 2e-12
seq322 82.4 1e-10
>seq890
Length=199488
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 23095 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 23154
||||| || |||||| || ||||| || |||||| | || ||||| || ||||||||
Sbjct 10655 CACGGTGACGGATATCCGTTCGATGGGCCGGGTCAAGTGTTGGCTCACGCATTTTTCCCG 10596
Query 23155 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 23202
|| || ||| |||||||||| ||||||||||| |||||| | |||
Sbjct 10595 GGCACCGGACGAGGAGGAGACGCTCATTTTGACGAGGAAGAAGAATGG 10548
>seq322
Length=669892
Score = 82.4 bits (90), Expect = 1e-10
Identities = 112/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 194239 ATACCTGAAATAGGGGATAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTAT 194297
|||||| |||| || ||||||||| ||| || |||| |||||||||||| ||||| ||
Sbjct 12603 ATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGG-TCAAAAAGGAACATGTGGAAT 12545
Query 194298 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 194357
|| ||| ||||||||||| || || | ||| || ||| |||||||||||
Sbjct 12544 ACAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 12485
Query 194358 CAATCCAAATTGTATTCCGTCCAGAATGACCATT 194391
||||| | ||| || ||| | ||||| |||
Sbjct 12484 TAATCCTCACGCTATCCCTTCCCGTATGACAATT 12451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632300446079000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |