Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq31 129 9e-24 seq368 125 1e-22 seq276 123 4e-22 seq1982 113 7e-19 seq1976 87.8 3e-11 >seq31 Length=1982931 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| ||||| ||||| |||||||||| |||||| |||||| ||| Sbjct 1639466 TGTATTTGGTGACGGCTTTGGTTCCCTCACTGACGGCGTGCTTGGCCAACTCGCCGGGCA 1639407 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||| ||||| || || || ||| || |||||||| | Sbjct 1639406 ACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGATGGTCGAACGCTTGTTGTAGT 1639347 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || | || |||| |||| || |||| | ||||||||||| ||||| Sbjct 1639346 GAGCCAAACGACTGGATTCGGAAGCGATACGCTCGAAGAGATCGTTGACAAAACTGTTCA 1639287 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| || ||| | ||| ||| |||||||| ||||| | ||| |||| Sbjct 1639286 TGATGCTCATCGCCTTTGAGGAAACGCCGGTGTCTGGGTGCACTTGCTTCAACACTTTGT 1639227 Query 1485710 A 1485710 | Sbjct 1639226 A 1639226 >seq368 Length=290577 Score = 125 bits (138), Expect = 1e-22 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| ||||||||||| || || ||| |||||| |||||| ||| ||| ||| Sbjct 115634 TACTTGGTCACGGCCTTGGTGCCTTCGCTGACTGCGTGCTTGGCCAATTCACCGGGCAAC 115575 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || ||||| ||||||||||| || |||||| | |||||||| | Sbjct 115574 AAAAGCCGGACGGCCGTCTGGATCTCTTTACTGGAGATCGTCCTACGCTTGTTGTATTGG 115515 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| ||| |||||| || ||||||| |||| | ||||||||| || ||||||| Sbjct 115514 GCCAGACGGTTAGCCTCGCTGGCGATGCGCTCGAAAAGGTCGTTGACGAAGCTGTTCATG 115455 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | || ||||||| ||||| ||||| || || ||||| ||||| Sbjct 115454 ATACTCATGGCCTTTGACGAGATGCTGGTATCGGGATGCACTTGTTTCAGCACTTTGTA 115396 >seq276 Length=376631 Score = 123 bits (136), Expect = 4e-22 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| ||||| ||||| |||||||||| |||||| ||||||| ||| Sbjct 145484 TGTATTTGGTGACGGCTTTGGTTCCCTCACTGACGGCGTGCTTGGCCAATTCGCCGGGCA 145543 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| |||||||| ||||| || || || ||| || |||||||| | Sbjct 145544 ACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGATAGTTGAACGCTTGTTGTAGT 145603 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || | || || | |||| || |||| | |||||||| || ||||| Sbjct 145604 GAGCCAAACGACTGGATTCAGAAGCGATACGTTCGAAGAGATCGTTGACGAAACTGTTCA 145663 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| | ||| ||| |||||||| ||||| ||||| |||| Sbjct 145664 TGATGCTCATTGCCTTTGAGGAAACGCCAGTGTCTGGGTGCACTTGCTTCAGCACTTTGT 145723 Query 1485710 A 1485710 | Sbjct 145724 A 145724 >seq1982 Length=85936 Score = 113 bits (124), Expect = 7e-19 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 ||||||||||||||||||| || |||||||| | | |||||||| |||||||| |||| Sbjct 42527 TGCCGTCGGTGCCGTTTTTGAAGCCGACCGGGCAGGAGAGCGCCGAGGCCATTTCACGGT 42586 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175 | | |||||| |||||||||||||| || | ||||||||| Sbjct 42587 GGATCTGGCTTTCGGTGGTGCGCGCACCGATGGCGCCCCA 42626 >seq1976 Length=85193 Score = 87.8 bits (96), Expect = 3e-11 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 2175021 AGAAAGGTGTGTGGCTGCGC-GGCGGTGCGCACGGCATCGAGCGCCG--TTGCCACGCTG 2175077 || ||| ||| ||| |||| ||||| | | ||| |||| |||| ||| | | || Sbjct 197 AGGAAGCAGTGCGGC-GCGCCGGCGGCGTTGATGGCGTCGATCGCCACCTTG--ATGGTG 141 Query 2175078 CCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGC 2175137 |||||||||||||| || || |||||||| | | || | || |||| ||| |||||| Sbjct 140 CCGTCGGTGCCGTTCTTGAAGCCGACCGGGCAAGAGAGACCAGAGGCCAGTTCACGGTGC 81 Query 2175138 ACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175 ||||| || |||||||||||||| | ||||||||| Sbjct 80 ACCTGCGATTCCGTGGTGCGCGCGCCGATGGCGCCCCA 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913701388628075