Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq31 129 9e-24
seq368 125 1e-22
seq276 123 4e-22
seq1982 113 7e-19
seq1976 87.8 3e-11
>seq31
Length=1982931
Score = 129 bits (142), Expect = 9e-24
Identities = 173/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||| ||||| ||||| |||||||||| |||||| |||||| |||
Sbjct 1639466 TGTATTTGGTGACGGCTTTGGTTCCCTCACTGACGGCGTGCTTGGCCAACTCGCCGGGCA 1639407
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||| |||||||| ||||| || || || ||| || |||||||| |
Sbjct 1639406 ACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGATGGTCGAACGCTTGTTGTAGT 1639347
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| || | || |||| |||| || |||| | ||||||||||| |||||
Sbjct 1639346 GAGCCAAACGACTGGATTCGGAAGCGATACGCTCGAAGAGATCGTTGACAAAACTGTTCA 1639287
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||||| || ||| | ||| ||| |||||||| ||||| | ||| ||||
Sbjct 1639286 TGATGCTCATCGCCTTTGAGGAAACGCCGGTGTCTGGGTGCACTTGCTTCAACACTTTGT 1639227
Query 1485710 A 1485710
|
Sbjct 1639226 A 1639226
>seq368
Length=290577
Score = 125 bits (138), Expect = 1e-22
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|||||||| ||||||||||| || || ||| |||||| |||||| ||| ||| |||
Sbjct 115634 TACTTGGTCACGGCCTTGGTGCCTTCGCTGACTGCGTGCTTGGCCAATTCACCGGGCAAC 115575
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
| || || ||||| ||||||||||| || |||||| | |||||||| |
Sbjct 115574 AAAAGCCGGACGGCCGTCTGGATCTCTTTACTGGAGATCGTCCTACGCTTGTTGTATTGG 115515
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
||||| ||| |||||| || ||||||| |||| | ||||||||| || |||||||
Sbjct 115514 GCCAGACGGTTAGCCTCGCTGGCGATGCGCTCGAAAAGGTCGTTGACGAAGCTGTTCATG 115455
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710
|| ||| | || ||||||| ||||| ||||| || || ||||| |||||
Sbjct 115454 ATACTCATGGCCTTTGACGAGATGCTGGTATCGGGATGCACTTGTTTCAGCACTTTGTA 115396
>seq276
Length=376631
Score = 123 bits (136), Expect = 4e-22
Identities = 172/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||| ||||||||||| ||||| ||||| |||||||||| |||||| ||||||| |||
Sbjct 145484 TGTATTTGGTGACGGCTTTGGTTCCCTCACTGACGGCGTGCTTGGCCAATTCGCCGGGCA 145543
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||| |||||||| ||||| || || || ||| || |||||||| |
Sbjct 145544 ACAAGAGGCGGACGGCGGTTTGGATTTCCCGACTGGTGATAGTTGAACGCTTGTTGTAGT 145603
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| || | || || | |||| || |||| | |||||||| || |||||
Sbjct 145604 GAGCCAAACGACTGGATTCAGAAGCGATACGTTCGAAGAGATCGTTGACGAAACTGTTCA 145663
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | || ||| | ||| ||| |||||||| ||||| ||||| ||||
Sbjct 145664 TGATGCTCATTGCCTTTGAGGAAACGCCAGTGTCTGGGTGCACTTGCTTCAGCACTTTGT 145723
Query 1485710 A 1485710
|
Sbjct 145724 A 145724
>seq1982
Length=85936
Score = 113 bits (124), Expect = 7e-19
Identities = 85/100 (85%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135
||||||||||||||||||| || |||||||| | | |||||||| |||||||| ||||
Sbjct 42527 TGCCGTCGGTGCCGTTTTTGAAGCCGACCGGGCAGGAGAGCGCCGAGGCCATTTCACGGT 42586
Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175
| | |||||| |||||||||||||| || | |||||||||
Sbjct 42587 GGATCTGGCTTTCGGTGGTGCGCGCACCGATGGCGCCCCA 42626
>seq1976
Length=85193
Score = 87.8 bits (96), Expect = 3e-11
Identities = 117/158 (74%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 2175021 AGAAAGGTGTGTGGCTGCGC-GGCGGTGCGCACGGCATCGAGCGCCG--TTGCCACGCTG 2175077
|| ||| ||| ||| |||| ||||| | | ||| |||| |||| ||| | | ||
Sbjct 197 AGGAAGCAGTGCGGC-GCGCCGGCGGCGTTGATGGCGTCGATCGCCACCTTG--ATGGTG 141
Query 2175078 CCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGC 2175137
|||||||||||||| || || |||||||| | | || | || |||| ||| ||||||
Sbjct 140 CCGTCGGTGCCGTTCTTGAAGCCGACCGGGCAAGAGAGACCAGAGGCCAGTTCACGGTGC 81
Query 2175138 ACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCA 2175175
||||| || |||||||||||||| | |||||||||
Sbjct 80 ACCTGCGATTCCGTGGTGCGCGCGCCGATGGCGCCCCA 43
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7913701388628075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |