Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 134 9e-27
seq276 89.7 3e-13
seq231 84.2 1e-11
>seq2302
Length=121279
Score = 134 bits (148), Expect = 9e-27
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| || || |||||||||||||| || ||| | || |||| ||
Sbjct 52526 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCA 52585
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| |||||||| |||||||||||| | || | || |||||||| |
Sbjct 52586 AGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 52645
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 52646 ATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTT 52705
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| ||||| |||||
Sbjct 52706 CCTGTGAGGGTCTTTACGAAGATTTGCAT 52734
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| || || |||||||||||||| || || |||| | || ||
Sbjct 52754 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGTCCGTCTTCA 52813
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| ||||||| ||||| |||||| | || | || |||||||| |
Sbjct 52814 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGG 52873
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 52874 ATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 52933
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || ||||| |||||
Sbjct 52934 CCAGTGAGGGTCTTAACGAAGATTTGCAT 52962
Score = 116 bits (128), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 54122 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 54181
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| ||||||| ||||| |||||| | || | || || ||||| |
Sbjct 54182 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 54241
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || ||| || | | || || ||| | || || || | || |||||||||
Sbjct 54242 ATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 54301
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||||||||| |||||
Sbjct 54302 CCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 53210 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53269
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| ||||||| |||||||||||| | || | || |||||||| |
Sbjct 53270 AGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53329
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 53330 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 53389
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || ||||| |||||
Sbjct 53390 CCAGTGAGGGTCTTAACGAAGATTTGCAT 53418
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 53666 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53725
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| ||||||| |||||||||||| | || | || |||||||| |
Sbjct 53726 AGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53785
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 53786 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 53845
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || ||||| |||||
Sbjct 53846 CCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 52982 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53041
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
||||||||||| || ||||||| |||||||||||| | || | || |||||||| |
Sbjct 53042 AGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53101
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 53102 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 53161
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || ||||| |||||
Sbjct 53162 CCAGTGAGGGTCTTAACGAAGATTTGCAT 53190
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 53438 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53497
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||||||||| ||||||| ||||| |||||| | || | || |||||||| |
Sbjct 53498 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53557
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 53558 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 53617
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || ||||| |||||
Sbjct 53618 CCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| || || || |||||||| ||||| || ||| | || | || ||
Sbjct 53894 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53953
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
||||||||||| || ||||||| ||||| || ||| | || | || |||||||| |
Sbjct 53954 AGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 54013
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || || || | | || || ||| | || || || | || |||||||||
Sbjct 54014 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 54073
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| ||||||||||| || |||||||||||
Sbjct 54074 CCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833
||||| ||| || ||||| ||||| ||||| || || |||| | || || |||||
Sbjct 54355 GTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTG 54414
Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893
||||||||| ||||||| ||||| ||||| | || | || || ||||| | || ||
Sbjct 54415 CTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCTT 54474
Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953
||| || | | || || || | ||| || || | || || || || || ||
Sbjct 54475 AGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 54534
Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978
| || || |||||||||||||||
Sbjct 54535 CAAAGTTTTGACAAAGATCTGCATG 54559
>seq276
Length=376631
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| || | ||||| || || | || |||||||| |||||||| |||| | || ||||
Sbjct 240723 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 240665
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||||||||| || || | ||| || || ||| | || | || || |||||
Sbjct 240664 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 240605
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| || | | || || || | || || || | ||||||||
Sbjct 240604 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGT 240545
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || || || |||||||| |||||
Sbjct 240544 TTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| || | ||||| || || | || |||||||| |||||||| |||| | || ||||
Sbjct 241407 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 241349
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||||||||| || || | ||| || || ||| | || | ||| || |||||
Sbjct 241348 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 241289
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| || | | || || || | || || || | || |||||
Sbjct 241288 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 241229
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || |||||||| |||||
Sbjct 241228 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| || | ||||| || || | || |||||||| |||||||| |||| | || ||||
Sbjct 241635 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATC 241577
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||||||||| || || | ||| || || ||| | || | ||| || |||||
Sbjct 241576 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 241517
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| || | | || || || | || || || | || |||||
Sbjct 241516 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGT 241457
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || |||||||| |||||
Sbjct 241456 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| || | ||||| || || | || |||||||| |||||||| |||| | || ||||
Sbjct 240951 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 240893
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||||||||| || || | ||| || || ||| | || | || || |||||
Sbjct 240892 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 240833
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| || | | || || || | || || || | || |||||
Sbjct 240832 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 240773
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || |||||||| |||||
Sbjct 240772 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|| || | ||||| || || | || |||||||| |||||||| |||| | || ||||
Sbjct 241179 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATC 241121
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| |||||||||||| || || | ||| || || ||| | || | || || |||||
Sbjct 241120 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 241061
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| ||| || | | || || || | || || || | || |||||
Sbjct 241060 TTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGT 241001
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || |||||||| |||||
Sbjct 241000 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
>seq231
Length=580210
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || |||||||| || || | | || |||| || || ||||| ||||||||||
Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| || || | || | || || || || | ||||| |||||| |
Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTT 340948
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || | |||||| |||| ||| |||||||| || || ||||| || || |
Sbjct 340949 CGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 341008
Query 34968 AGATCTGCATG 34978
| || ||||||
Sbjct 341009 AAATTTGCATG 341019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325597832559575
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