Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2302 134 9e-27 seq276 89.7 3e-13 seq231 84.2 1e-11 >seq2302 Length=121279 Score = 134 bits (148), Expect = 9e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||||||||| || ||| | || |||| || Sbjct 52526 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCATCTTCA 52585 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| |||||||| |||||||||||| | || | || |||||||| | Sbjct 52586 AGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 52645 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 52646 ATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATGGTCTTT 52705 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| ||||| ||||| Sbjct 52706 CCTGTGAGGGTCTTTACGAAGATTTGCAT 52734 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||||||||| || || |||| | || || Sbjct 52754 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGTGCGTCCGTCTTCA 52813 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || |||||||| | Sbjct 52814 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGG 52873 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 52874 ATCTTAGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 52933 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 52934 CCAGTGAGGGTCTTAACGAAGATTTGCAT 52962 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 54122 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 54181 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || || ||||| | Sbjct 54182 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 54241 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||| || | | || || ||| | || || || | || ||||||||| Sbjct 54242 ATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 54301 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||||||||| ||||| Sbjct 54302 CCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 53210 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53269 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| |||||||||||| | || | || |||||||| | Sbjct 53270 AGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53329 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 53330 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 53389 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 53390 CCAGTGAGGGTCTTAACGAAGATTTGCAT 53418 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 53666 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53725 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| |||||||||||| | || | || |||||||| | Sbjct 53726 AGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53785 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 53786 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 53845 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 53846 CCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 52982 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53041 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 ||||||||||| || ||||||| |||||||||||| | || | || |||||||| | Sbjct 53042 AGTTGCTTTCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53101 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 53102 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATGGTCTTT 53161 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 53162 CCAGTGAGGGTCTTAACGAAGATTTGCAT 53190 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 53438 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53497 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || |||||||| | Sbjct 53498 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGG 53557 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 53558 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 53617 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 53618 CCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||| ||||| || ||| | || | || || Sbjct 53894 ACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCTTCA 53953 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 ||||||||||| || ||||||| ||||| || ||| | || | || |||||||| | Sbjct 53954 AGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 54013 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | || ||||||||| Sbjct 54014 ATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATGGTCTTT 54073 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||||||||| Sbjct 54074 CCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||||| ||| || ||||| ||||| ||||| || || |||| | || || ||||| Sbjct 54355 GTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCGTCTTCAAGTTG 54414 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||||||||| ||||||| ||||| ||||| | || | || || ||||| | || || Sbjct 54415 CTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATCTT 54474 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||| || | | || || || | ||| || || | || || || || || || Sbjct 54475 AGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 54534 Query 34954 GAGGGTCTTTACAAAGATCTGCATG 34978 | || || ||||||||||||||| Sbjct 54535 CAAAGTTTTGACAAAGATCTGCATG 54559 >seq276 Length=376631 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || | ||||| || || | || |||||||| |||||||| |||| | || |||| Sbjct 240723 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 240665 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||||||||| || || | ||| || || ||| | || | || || ||||| Sbjct 240664 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 240605 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || || || | || || || | |||||||| Sbjct 240604 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGT 240545 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || || |||||||| ||||| Sbjct 240544 TTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || | ||||| || || | || |||||||| |||||||| |||| | || |||| Sbjct 241407 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 241349 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||||||||| || || | ||| || || ||| | || | ||| || ||||| Sbjct 241348 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 241289 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || || || | || || || | || ||||| Sbjct 241288 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 241229 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || |||||||| ||||| Sbjct 241228 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || | ||||| || || | || |||||||| |||||||| |||| | || |||| Sbjct 241635 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATC 241577 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||||||||| || || | ||| || || ||| | || | ||| || ||||| Sbjct 241576 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTC 241517 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || || || | || || || | || ||||| Sbjct 241516 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGT 241457 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || |||||||| ||||| Sbjct 241456 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || | ||||| || || | || |||||||| |||||||| |||| | || |||| Sbjct 240951 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCGGATAACGTACGGCCATC 240893 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||||||||| || || | ||| || || ||| | || | || || ||||| Sbjct 240892 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 240833 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || || || | || || || | || ||||| Sbjct 240832 TTGAATTTTAGCTTTCACATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGT 240773 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || |||||||| ||||| Sbjct 240772 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || | ||||| || || | || |||||||| |||||||| |||| | || |||| Sbjct 241179 AGTACTAAGTGAAGTGTTGAT-TCTTTCTGAATATTATAGTCAGATAACGTACGGCCATC 241121 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||||||||| || || | ||| || || ||| | || | || || ||||| Sbjct 241120 TTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTC 241061 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || || || | || || || | || ||||| Sbjct 241060 TTGAATTTTCGCTTTCACATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGT 241001 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || ||||| || |||||||| ||||| Sbjct 241000 TTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968 >seq231 Length=580210 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| || || | | || |||| || || ||||| |||||||||| Sbjct 340829 CCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 340888 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | || || || || | ||||| |||||| | Sbjct 340889 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTT 340948 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || | |||||| |||| ||| |||||||| || || ||||| || || | Sbjct 340949 CGATAGTGTCTGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 341008 Query 34968 AGATCTGCATG 34978 | || |||||| Sbjct 341009 AAATTTGCATG 341019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325597832559575