Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1477 351 3e-92 >seq1477 Length=14545 Score = 351 bits (388), Expect = 3e-92 Identities = 479/667 (72%), Gaps = 4/667 (1%) Strand=Plus/Plus Query 9255 GAGGAGTCTGCATAATGGCCCGTATCGGGGGAACCTGTTATTTCAAAATTGACGGTCAGC 9314 |||||| | |||||||||||||| | || ||| ||||||||| | ||||| | | Sbjct 1 GAGGAGAGCGAATAATGGCCCGTATTGCTGGTACCACGTATTTCAAACTCGACGGGCTTC 60 Query 9315 AGCTATCGCTGACCGGCGGCATTGAGGTGCCCATGAACAGGACGGTCAATGATGACATCA 9374 || | ||||| || ||||| ||||| ||||| ||||||| | ||| || ||||| | | Sbjct 61 AGTTGTCGCTTACTGGCGGTATTGAAGTGCCGATGAACACCAAGGTAAACGATGATGTGA 120 Query 9375 TCGGCCTGGACGGTTCAGTGGACCGCAAGGAAACTCACCGTGCGCCTTATGTCAAAGGGA 9434 ||||||| || ||||| || ||||| || ||||| ||||| ||||| || | ||||| | Sbjct 121 TCGGCCTTGATGGTTCTGTTGACCGTAAAGAAACGCACCGCGCGCCCTACATTAAAGGCA 180 Query 9435 CCTTCAAGGTGCCGAAGAATTTTCCGGTGAGCAAAATCACCTCGTCTGATGAGATGACCA 9494 |||| || ||||| ||| || ||| | |||||||||||| ||| || |||||| Sbjct 181 CCTTTAAAGTGCCTAAGGGCTTCCCGCTCAGCAAAATCACCGAGTCCGACAGCATGACCG 240 Query 9495 TCACTGCCGAGCTGGCGAACGGTCAGGTCTATGTATTGTCGTCTGCCTGGCTGCACGGCG 9554 ||||| || |||||||| |||||||| ||||| || | ||||||||| || | Sbjct 241 GTACTGCTGAACTGGCGAATGGTCAGGTGTATGTCCTGACCGAAGCCTGGCTGTTTGGTG 300 Query 9555 AAGCGAACCATAATGCCGAAGAAGGCACGGTTGATCTTGAGTTCCACGGTGAAGAAGGGG 9614 | || ||||| ||||| ||||| ||||||||||| ||||| ||||||||| ||||| Sbjct 301 AGGCCAACCACAATGCTGAAGAGGGCACGGTTGACCTTGAATTCCACGGTTCTGAAGGAT 360 Query 9615 ATTACCAGTGATTGAGCTTGTACTTAAAAAACCGATCATCGCCCACAAAGAAACACTGCA 9674 ||||||||| || | ||||| | ||||| || | || || || || || || Sbjct 361 TCTACCAGTGAAAGAATTGGTACTGACTAAACCCATTGTGGCGGCAAATGAGACGCTTCA 420 Query 9675 TGTGCTGGAAATACGTGAGCCTACGTATGACGAGATTGAGGCGCTGGGGTTCCCTTTCTC 9734 |||||||||||| || ||||| || |||||||| ||||| | | || | |||| || Sbjct 421 TGTGCTGGAAATCCGCGAGCCAACTTATGACGAAGTTGAGCAGTTCGGCATTCCTT--TC 478 Query 9735 TGTTTCGCCTGAT--GGTGGTATGAAAATGGACAGTCAGGTGGCGCTGAAATATATCCCG 9792 | | | | || |||| |||||| ||||| | || ||||||||||||||||| Sbjct 479 AGCTACAACGAATCCGGTGAAATGAAACTGGACTCCCGCGTCACGCTGAAATATATCCCG 538 Query 9793 CTTCTGGCCGGGATCCCGCGCTCGTCTGCAGCGCAGATGACGAAGCTGGATATTTTCAAG 9852 |||| || | |||||||| || || ||||| | ||||| ||| | |||| | Sbjct 539 GTTCTTGCAGCTATCCCGCGTTCTTCAGCAGCAAAACTGACGCTCAAAGATGTCTTCATG 598 Query 9853 GCAGGCATGATTGTAATGCGtttttttACCGGCTTGGAGACGGAAGAGAGCTCCGGAAGC 9912 ||| |||| | | |||||||||| || | ||| ||| ||||| || | |||| Sbjct 599 GCATCGATGACAATCGTTGGTTTTTTTACGGGGTCGGAAGCGGCGGAGAGTTCAGAAAGC 658 Query 9913 GATTCTA 9919 || |||| Sbjct 659 GACTCTA 665 Score = 122 bits (134), Expect = 2e-23 Identities = 256/376 (68%), Gaps = 8/376 (2%) Strand=Plus/Plus Query 14546 ATTGAACATCTTGAACCCTACGGTTTTACCGCAAGGGCAAACAGCGGTGCGGAAGCGGTG 14605 || ||||| ||||| ||||| || ||||| || ||| ||||| ||||| || || Sbjct 6645 ATCGAACAACTTGAGCCCTATGGCTTTACGTCAGCAGCACTGAGCGGCGCGGAGGCCGTT 6704 Query 14606 GTGTTGTTTCCG--GATGGCGACCGTTCTCATG-CGGTG-GTTGTTACGGTGTCGGACCG 14661 | | | || | ||||| || ||||| || | || || |||| | ||| |||| || Sbjct 6705 GCG--GCTTACTTTGATGGTGATCGTTCACACGGCGTTGTGTTGGT--GGTCGCGGATCG 6760 Query 14662 GCGCTACCGCCTGAAAGGGCTGCAGACGGGTGAGGTGGCTGTCTATGACGATCAGGGGCA 14721 || || || |||||||| | || | |||||||| || | |||||||| || | | Sbjct 6761 TCGGTATCGGCTGAAAGGCTTAAAGTCCGGTGAGGTTGCCATTTATGACGACCAACAGAA 6820 Query 14722 GTCTGTGACGCTGACCCGGGAGGGGATCGTGGTGGACGGTGCAGGTAAAACGATCACGTT 14781 ||| || || ||||| || ||||| || ||||| || | || ||| |||||| | Sbjct 6821 GTCGGTAACCCTGACACGCACAGGGATTGTTGTGGATGGAGGCGGCAAACAGATCACCCT 6880 Query 14782 TCGCAATGCGCCTAAGGCACGTTTTGAAATGGACCTGGAAGTGACAGGACAGGTGAAAGA 14841 | || || || ||||| || |||||||||||| | |||| ||||| | | | || Sbjct 6881 TAAAAACGCTCCAAAGGCGCGCTTTGAAATGGACATAGAAGCCACAGGCAACATCACTGA 6940 Query 14842 CCTGTGCGACTCCGGCGGCACCACCATGTCAGCGATGCGGCTTGCCTATAACGGGCATCG 14901 | || || || |||||| | ||| | |||||| | ||||||||||||| Sbjct 6941 CAACTGTGATTCTGGCGGCGTATCAATGGCCCAGATGCGTGTGACCTATAACGGGCACAA 7000 Query 14902 TCACAGAGAGAACGGT 14917 || | |||||||||| Sbjct 7001 GCATAAAGAGAACGGT 7016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127067888562000