Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq1477 351 3e-92
>seq1477
Length=14545
Score = 351 bits (388), Expect = 3e-92
Identities = 479/667 (72%), Gaps = 4/667 (1%)
Strand=Plus/Plus
Query 9255 GAGGAGTCTGCATAATGGCCCGTATCGGGGGAACCTGTTATTTCAAAATTGACGGTCAGC 9314
|||||| | |||||||||||||| | || ||| ||||||||| | ||||| | |
Sbjct 1 GAGGAGAGCGAATAATGGCCCGTATTGCTGGTACCACGTATTTCAAACTCGACGGGCTTC 60
Query 9315 AGCTATCGCTGACCGGCGGCATTGAGGTGCCCATGAACAGGACGGTCAATGATGACATCA 9374
|| | ||||| || ||||| ||||| ||||| ||||||| | ||| || ||||| | |
Sbjct 61 AGTTGTCGCTTACTGGCGGTATTGAAGTGCCGATGAACACCAAGGTAAACGATGATGTGA 120
Query 9375 TCGGCCTGGACGGTTCAGTGGACCGCAAGGAAACTCACCGTGCGCCTTATGTCAAAGGGA 9434
||||||| || ||||| || ||||| || ||||| ||||| ||||| || | ||||| |
Sbjct 121 TCGGCCTTGATGGTTCTGTTGACCGTAAAGAAACGCACCGCGCGCCCTACATTAAAGGCA 180
Query 9435 CCTTCAAGGTGCCGAAGAATTTTCCGGTGAGCAAAATCACCTCGTCTGATGAGATGACCA 9494
|||| || ||||| ||| || ||| | |||||||||||| ||| || ||||||
Sbjct 181 CCTTTAAAGTGCCTAAGGGCTTCCCGCTCAGCAAAATCACCGAGTCCGACAGCATGACCG 240
Query 9495 TCACTGCCGAGCTGGCGAACGGTCAGGTCTATGTATTGTCGTCTGCCTGGCTGCACGGCG 9554
||||| || |||||||| |||||||| ||||| || | ||||||||| || |
Sbjct 241 GTACTGCTGAACTGGCGAATGGTCAGGTGTATGTCCTGACCGAAGCCTGGCTGTTTGGTG 300
Query 9555 AAGCGAACCATAATGCCGAAGAAGGCACGGTTGATCTTGAGTTCCACGGTGAAGAAGGGG 9614
| || ||||| ||||| ||||| ||||||||||| ||||| ||||||||| |||||
Sbjct 301 AGGCCAACCACAATGCTGAAGAGGGCACGGTTGACCTTGAATTCCACGGTTCTGAAGGAT 360
Query 9615 ATTACCAGTGATTGAGCTTGTACTTAAAAAACCGATCATCGCCCACAAAGAAACACTGCA 9674
||||||||| || | ||||| | ||||| || | || || || || || ||
Sbjct 361 TCTACCAGTGAAAGAATTGGTACTGACTAAACCCATTGTGGCGGCAAATGAGACGCTTCA 420
Query 9675 TGTGCTGGAAATACGTGAGCCTACGTATGACGAGATTGAGGCGCTGGGGTTCCCTTTCTC 9734
|||||||||||| || ||||| || |||||||| ||||| | | || | |||| ||
Sbjct 421 TGTGCTGGAAATCCGCGAGCCAACTTATGACGAAGTTGAGCAGTTCGGCATTCCTT--TC 478
Query 9735 TGTTTCGCCTGAT--GGTGGTATGAAAATGGACAGTCAGGTGGCGCTGAAATATATCCCG 9792
| | | | || |||| |||||| ||||| | || |||||||||||||||||
Sbjct 479 AGCTACAACGAATCCGGTGAAATGAAACTGGACTCCCGCGTCACGCTGAAATATATCCCG 538
Query 9793 CTTCTGGCCGGGATCCCGCGCTCGTCTGCAGCGCAGATGACGAAGCTGGATATTTTCAAG 9852
|||| || | |||||||| || || ||||| | ||||| ||| | |||| |
Sbjct 539 GTTCTTGCAGCTATCCCGCGTTCTTCAGCAGCAAAACTGACGCTCAAAGATGTCTTCATG 598
Query 9853 GCAGGCATGATTGTAATGCGtttttttACCGGCTTGGAGACGGAAGAGAGCTCCGGAAGC 9912
||| |||| | | |||||||||| || | ||| ||| ||||| || | ||||
Sbjct 599 GCATCGATGACAATCGTTGGTTTTTTTACGGGGTCGGAAGCGGCGGAGAGTTCAGAAAGC 658
Query 9913 GATTCTA 9919
|| ||||
Sbjct 659 GACTCTA 665
Score = 122 bits (134), Expect = 2e-23
Identities = 256/376 (68%), Gaps = 8/376 (2%)
Strand=Plus/Plus
Query 14546 ATTGAACATCTTGAACCCTACGGTTTTACCGCAAGGGCAAACAGCGGTGCGGAAGCGGTG 14605
|| ||||| ||||| ||||| || ||||| || ||| ||||| ||||| || ||
Sbjct 6645 ATCGAACAACTTGAGCCCTATGGCTTTACGTCAGCAGCACTGAGCGGCGCGGAGGCCGTT 6704
Query 14606 GTGTTGTTTCCG--GATGGCGACCGTTCTCATG-CGGTG-GTTGTTACGGTGTCGGACCG 14661
| | | || | ||||| || ||||| || | || || |||| | ||| |||| ||
Sbjct 6705 GCG--GCTTACTTTGATGGTGATCGTTCACACGGCGTTGTGTTGGT--GGTCGCGGATCG 6760
Query 14662 GCGCTACCGCCTGAAAGGGCTGCAGACGGGTGAGGTGGCTGTCTATGACGATCAGGGGCA 14721
|| || || |||||||| | || | |||||||| || | |||||||| || | |
Sbjct 6761 TCGGTATCGGCTGAAAGGCTTAAAGTCCGGTGAGGTTGCCATTTATGACGACCAACAGAA 6820
Query 14722 GTCTGTGACGCTGACCCGGGAGGGGATCGTGGTGGACGGTGCAGGTAAAACGATCACGTT 14781
||| || || ||||| || ||||| || ||||| || | || ||| |||||| |
Sbjct 6821 GTCGGTAACCCTGACACGCACAGGGATTGTTGTGGATGGAGGCGGCAAACAGATCACCCT 6880
Query 14782 TCGCAATGCGCCTAAGGCACGTTTTGAAATGGACCTGGAAGTGACAGGACAGGTGAAAGA 14841
| || || || ||||| || |||||||||||| | |||| ||||| | | | ||
Sbjct 6881 TAAAAACGCTCCAAAGGCGCGCTTTGAAATGGACATAGAAGCCACAGGCAACATCACTGA 6940
Query 14842 CCTGTGCGACTCCGGCGGCACCACCATGTCAGCGATGCGGCTTGCCTATAACGGGCATCG 14901
| || || || |||||| | ||| | |||||| | |||||||||||||
Sbjct 6941 CAACTGTGATTCTGGCGGCGTATCAATGGCCCAGATGCGTGTGACCTATAACGGGCACAA 7000
Query 14902 TCACAGAGAGAACGGT 14917
|| | ||||||||||
Sbjct 7001 GCATAAAGAGAACGGT 7016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127067888562000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |