Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq485 91.5 2e-13
seq231 86.0 1e-11
seq2302 84.2 3e-11
>seq485
Length=275053
Score = 91.5 bits (100), Expect = 2e-13
Identities = 111/150 (74%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 243467 attattaactatatttgaatatataaataagcat---tatgatttaaaattaGATACATG 243523
||| ||| ||||||||||| ||||||| | || ||||||||||| ||| | ||
Sbjct 213380 ATTTTTAGATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTG 213439
Query 243524 GTTTTATGATATT---TGGTTACCTTTATTTGAAGAGAAAGATGTCTTGATCACTGATAA 243580
||| | |||||| || || || ||||||||||||||| || | || || ||| || |
Sbjct 213440 GTTCAAAGATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGA 213499
Query 243581 TATATTAAAATTTATTCATTATGGTATTAA 243610
||| | || ||||| ||||| ||||| ||
Sbjct 213500 TATTTCAACCTTTATACATTACGGTATAAA 213529
Score = 91.5 bits (100), Expect = 2e-13
Identities = 111/150 (74%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 2108 TTAATACCATAATGAATAAATTTTAATATATTATCAGTGATCAAGACATCTTTCTCTTCA 2167
|| ||||| ||||| ||||| || | |||| || ||| || || | || ||||||||||
Sbjct 213529 TTTATACCGTAATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCA 213470
Query 2168 AATAAAGGTAACCA---AATATCATAAAACCATGTATCTAATTTTAAATCATA---ATGC 2221
||||| || || || |||||| | ||||| | ||| ||||||||||| ||
Sbjct 213469 AATAATGGAAAGCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTA 213410
Query 2222 TTATTTATATATTCAAATATAGTTAATAAT 2251
| ||||||| ||||||||||| ||| |||
Sbjct 213409 TAATTTATAAATTCAAATATATCTAAAAAT 213380
>seq231
Length=580210
Score = 86.0 bits (94), Expect = 1e-11
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||| | ||||| || || || || |||| || || | |
Sbjct 341017 TGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCAG 340958
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| ||||| ||||||| ||| ||||| ||| ||||||||| || |||||||||||||
Sbjct 340957 ACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAAC 340898
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || || || || | || ||| | || || | |||||||| |
Sbjct 340897 AACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTATAACA 340838
Query 146212 TACAAAA 146218
| |||||
Sbjct 340837 TCCAAAA 340831
>seq2302
Length=121279
Score = 84.2 bits (92), Expect = 3e-11
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| |||| || | |||||||| || ||||| | || |||||| | |
Sbjct 52733 TGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCTG 52674
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|| | ||| ||||||| || || || ||| || ||||| || ||||| || || |
Sbjct 52673 ATTCAATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGC 52614
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || || ||||| || || ||| | || ||| | || | | || ||||| |
Sbjct 52613 AACGTCTGATCTTTGCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATAACA 52554
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| ||||||||||| || | || || || || ||
Sbjct 52553 TTCAAAAAGAATCTACCCTTCACTTGGTGTTGCG 52520
Score = 84.2 bits (92), Expect = 3e-11
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090
|||| || || | ||||| || || || ||||| || ||| | || || || ||| |
Sbjct 54557 TGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCA- 54499
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||| | ||| ||||||||||| ||| || ||| |||||||| |||||||| || |||
Sbjct 54498 GATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGACCAA 54439
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | || ||||| || || ||| | || || | || | | || || ||
Sbjct 54438 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTACAAC 54379
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
|| || |||||||| || | || ||||| || ||
Sbjct 54378 ATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCG 54344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785931287111000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |