Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq485 91.5 2e-13 seq231 86.0 1e-11 seq2302 84.2 3e-11 >seq485 Length=275053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 243467 attattaactatatttgaatatataaataagcat---tatgatttaaaattaGATACATG 243523 ||| ||| ||||||||||| ||||||| | || ||||||||||| ||| | || Sbjct 213380 ATTTTTAGATATATTTGAATTTATAAATTATAATAAATATGATTTAAATGTAGGCAATTG 213439 Query 243524 GTTTTATGATATT---TGGTTACCTTTATTTGAAGAGAAAGATGTCTTGATCACTGATAA 243580 ||| | |||||| || || || ||||||||||||||| || | || || ||| || | Sbjct 213440 GTTCAAAGATATTAATTGCTTTCCATTATTTGAAGAGAAAAATATATTAATAACTAATGA 213499 Query 243581 TATATTAAAATTTATTCATTATGGTATTAA 243610 ||| | || ||||| ||||| ||||| || Sbjct 213500 TATTTCAACCTTTATACATTACGGTATAAA 213529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 2108 TTAATACCATAATGAATAAATTTTAATATATTATCAGTGATCAAGACATCTTTCTCTTCA 2167 || ||||| ||||| ||||| || | |||| || ||| || || | || |||||||||| Sbjct 213529 TTTATACCGTAATGTATAAAGGTTGAAATATCATTAGTTATTAATATATTTTTCTCTTCA 213470 Query 2168 AATAAAGGTAACCA---AATATCATAAAACCATGTATCTAATTTTAAATCATA---ATGC 2221 ||||| || || || |||||| | ||||| | ||| ||||||||||| || Sbjct 213469 AATAATGGAAAGCAATTAATATCTTTGAACCAATTGCCTACATTTAAATCATATTTATTA 213410 Query 2222 TTATTTATATATTCAAATATAGTTAATAAT 2251 | ||||||| ||||||||||| ||| ||| Sbjct 213409 TAATTTATAAATTCAAATATATCTAAAAAT 213380 >seq231 Length=580210 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | ||||| || || || || |||| || || | | Sbjct 341017 TGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCAG 340958 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| ||| ||||| ||| ||||||||| || ||||||||||||| Sbjct 340957 ACACTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCCGATCAAC 340898 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || || || | || ||| | || || | |||||||| | Sbjct 340897 AACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTATAACA 340838 Query 146212 TACAAAA 146218 | ||||| Sbjct 340837 TCCAAAA 340831 >seq2302 Length=121279 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || | |||||||| || ||||| | || |||||| | | Sbjct 52733 TGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCTG 52674 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||||| || || || ||| || ||||| || ||||| || || | Sbjct 52673 ATTCAATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGC 52614 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || ||| | || ||| | || | | || ||||| | Sbjct 52613 AACGTCTGATCTTTGCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATAACA 52554 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | || || || || || Sbjct 52553 TTCAAAAAGAATCTACCCTTCACTTGGTGTTGCG 52520 Score = 84.2 bits (92), Expect = 3e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | ||||| || || || ||||| || ||| | || || || ||| | Sbjct 54557 TGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCA- 54499 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||| | ||| ||||||||||| ||| || ||| |||||||| |||||||| || ||| Sbjct 54498 GATTCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGACCAA 54439 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| || || ||| | || || | || | | || || || Sbjct 54438 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTACAAC 54379 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || || |||||||| || | || ||||| || || Sbjct 54378 ATCCAGAAAGAATCTACCCTTCACTTAGTGTTGCG 54344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785931287111000