Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_023582.1
Length=92417
Score E
Sequences producing significant alignments: (Bits) Value
seq2740 228 5e-55
>seq2740
Length=4841
Score = 228 bits (252), Expect = 5e-55
Identities = 378/538 (70%), Gaps = 16/538 (3%)
Strand=Plus/Minus
Query 28016 AATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAA 28075
||||||| || | ||||| |||||||| |||||||| || |||||||||||| || |
Sbjct 4335 AATCTGGTCAGACATTTGGTGACTATGCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTA 4276
Query 28076 TTCCTACTGGTAATATAGTTACACTTGATGGCAGATTTATAAGAAAAGCACAAGTCAATG 28135
|||| | |||| || || || | ||||| | | || |||||||||||||| ||||
Sbjct 4275 TTCCAAACGGTATAATCGTAACTTTAGATGGGCGTTATACCAGAAAAGCACAAGTTAATG 4216
Query 28136 ATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCC 28195
| | ||||| || |||||||||| ||||| || ||| | ||||| ||||| | ||||
Sbjct 4215 ACAAGCCAATTGGCGTTATATCTGGTACAGCTGGGGTTGTGTTAGGTGACCAGTTATTCC 4156
Query 28196 ATCACAAAGATAAATATCTTAAAAATGAGTTTGGCGGAGTCATTACTGAAAGCGTCAAAA 28255
|||| ||||| | || | | ||| |||| || || | || | |||||| | ||| |
Sbjct 4155 ATCATAAAGACAGATTTATAAAAGATGAATTCGGAGTTGTGGTAACTGAA--CAACAAGA 4098
Query 28256 A---AGAATGGCAAGATGATGCTGGT-AATTGGTATTCAGATACAGTAGAAATGCCAGTT 28311
| ||| | || | ||| | ||| || | || | ||| | ||| || ||| |
Sbjct 4097 AGTTGAAATTGTAA-AAGATACAGGTGAAGTCGT-TAAAGAATTACGAGATATTCCATTA 4040
Query 28312 AAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTATCTCGTGCTGAACGACCA 28371
||||| || | |||||| | ||||| ||| | | ||| |||| |||||
Sbjct 4039 GTTAATCCTGAATACGACGAA------AATGAAGATTATTTGGCGCGTTCTGATAGACCA 3986
Query 28372 GAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAA 28431
|||||||| || |||||| | | |||||| ||| | ||||| ||| || || |||
Sbjct 3985 GAATGGAATGTCGTAGGTTTGACTGGTCAAATATTCACAAGAATTGATAACACAGTTAAA 3926
Query 28432 GAAAATGATTATAT-TAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTA 28490
| ||||||||||| |||| | | || ||| | ||||| ||||||||| | ||||||||
Sbjct 3925 GTCAATGATTATATAAAAGCTAAT-AATGGTATTGGAACAAAAGATAATGTGAATGGTTA 3867
Query 28491 TTATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCA 28548
|| |||||| |||| || || || || |||| || ||||| ||||| || |||
Sbjct 3866 CTACAGAGTTATGGAAATCACAACGCCTTACGATACTGAAAAAGGATATGGCGTAGCA 3809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 295523404397650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |