Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq890 87.8 2e-12 seq322 82.4 1e-10 >seq890 Length=199488 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22384 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 22443 ||||| || |||||| || ||||| || |||||| | || ||||| || |||||||| Sbjct 10655 CACGGTGACGGATATCCGTTCGATGGGCCGGGTCAAGTGTTGGCTCACGCATTTTTCCCG 10596 Query 22444 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 22491 || || ||| |||||||||| ||||||||||| |||||| | ||| Sbjct 10595 GGCACCGGACGAGGAGGAGACGCTCATTTTGACGAGGAAGAAGAATGG 10548 >seq322 Length=669892 Score = 82.4 bits (90), Expect = 1e-10 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTAT 193054 |||||| |||| || ||||||||| ||| || |||| | |||||||||| ||||| || Sbjct 12603 ATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTC-AAAAAGGAACATGTGGAAT 12545 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 || ||| ||||||||||| || || | ||| || ||| ||||||||||| Sbjct 12544 ACAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 12485 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 |||||| | ||| || ||| | ||||| ||| Sbjct 12484 TAATCCTCACGCTATCCCTTCCCGTATGACAATT 12451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628343229888000