Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_024149.1
Length=18899
Score E
Sequences producing significant alignments: (Bits) Value
seq2620 80.6 3e-11
>seq2620
Length=5891
Score = 80.6 bits (88), Expect = 3e-11
Identities = 267/407 (66%), Gaps = 15/407 (4%)
Strand=Plus/Minus
Query 5687 ATTTTGCTTCTAAAGACAGAATACACCAAAAATACCTTATCAAAACACAAGGGAAAC--A 5744
|||||| | ||| || | |||||| |||| || |||| ||||||||||| |||| |
Sbjct 2825 ATTTTGGTGCTAGGGATATCATACACGAAAACTATTTTATTAAAACACAAGGTAAACTCA 2766
Query 5745 AAAGAAAAAGGTTCTCATGCCTTCACCTTTAGATGTAACACTCACTGATGAAGATAATGA 5804
||| |||| | |||||| |||||| || ||| |||| || || |||||
Sbjct 2765 AAACCAAAA--TAGATATGCCTACACCTTATGACTATACAATCACAGACGAGCCAAATGA 2708
Query 5805 A-CTTCTTCTA-TCACCTGAAGAAATT--GATAACGCTAAAGTAGATTTAAATGGCTTGT 5860
| | || || | | ||||||| || | || | ||||| | | ||||| || |
Sbjct 2707 AACAGTTTATAGTGA--TGAAGAAGTTATGTTATCA--AAAGTTGTACTTAATGGATTAT 2652
Query 5861 ATGGTATCCCTGCTTTAAGACCTTTCTTTAATGTCTTTCAAACTATTGAAGATGAAATTA 5920
||||||| ||||| || | | ||||||| | || | | |||||| | ||
Sbjct 2651 ATGGTATTCCTGCCCTACGTTCACACTTTAATTTATTCCGTAAAGATGAAGACGGTTTTT 2592
Query 5921 T---TAATTTTCCTAAAGGATTTAAAAATAAAGAAAGAAATATTGTATTTTCAGCATGGG 5977
| ||| | ||| || | ||||||| |||| ||||||| |||| || | | |
Sbjct 2591 TATATAACATGATTAATGGTTACAAAAATACAGAACGAAATATATTATTCTCTACCTTTG 2532
Query 5978 TTACAGCACATGCTTTCTATAATTTGTTATCGCCTTTATTCTTCTTTACAGCACAACAGA 6037
|||| |||| | | |||||| | | ||| ||| ||| ||| | || | |
Sbjct 2531 TTACGTCACAATCACTTTATAATCTACTTGAGCCATTACAAGACTTAACACAAAAAGAAA 2472
Query 6038 TTGATGACGGCTTTGTATATGCTGATACAGATAGTTTATTTATTAAA 6084
|||| ||| |||| |||| ||||||||||||||||| | |||||
Sbjct 2471 TTGACGACAACTTTATATACTGTGATACAGATAGTTTATATCTTAAA 2425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 60341702886050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |