Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_024149.1 Length=18899 Score E Sequences producing significant alignments: (Bits) Value seq2620 80.6 3e-11 >seq2620 Length=5891 Score = 80.6 bits (88), Expect = 3e-11 Identities = 267/407 (66%), Gaps = 15/407 (4%) Strand=Plus/Minus Query 5687 ATTTTGCTTCTAAAGACAGAATACACCAAAAATACCTTATCAAAACACAAGGGAAAC--A 5744 |||||| | ||| || | |||||| |||| || |||| ||||||||||| |||| | Sbjct 2825 ATTTTGGTGCTAGGGATATCATACACGAAAACTATTTTATTAAAACACAAGGTAAACTCA 2766 Query 5745 AAAGAAAAAGGTTCTCATGCCTTCACCTTTAGATGTAACACTCACTGATGAAGATAATGA 5804 ||| |||| | |||||| |||||| || ||| |||| || || ||||| Sbjct 2765 AAACCAAAA--TAGATATGCCTACACCTTATGACTATACAATCACAGACGAGCCAAATGA 2708 Query 5805 A-CTTCTTCTA-TCACCTGAAGAAATT--GATAACGCTAAAGTAGATTTAAATGGCTTGT 5860 | | || || | | ||||||| || | || | ||||| | | ||||| || | Sbjct 2707 AACAGTTTATAGTGA--TGAAGAAGTTATGTTATCA--AAAGTTGTACTTAATGGATTAT 2652 Query 5861 ATGGTATCCCTGCTTTAAGACCTTTCTTTAATGTCTTTCAAACTATTGAAGATGAAATTA 5920 ||||||| ||||| || | | ||||||| | || | | |||||| | || Sbjct 2651 ATGGTATTCCTGCCCTACGTTCACACTTTAATTTATTCCGTAAAGATGAAGACGGTTTTT 2592 Query 5921 T---TAATTTTCCTAAAGGATTTAAAAATAAAGAAAGAAATATTGTATTTTCAGCATGGG 5977 | ||| | ||| || | ||||||| |||| ||||||| |||| || | | | Sbjct 2591 TATATAACATGATTAATGGTTACAAAAATACAGAACGAAATATATTATTCTCTACCTTTG 2532 Query 5978 TTACAGCACATGCTTTCTATAATTTGTTATCGCCTTTATTCTTCTTTACAGCACAACAGA 6037 |||| |||| | | |||||| | | ||| ||| ||| ||| | || | | Sbjct 2531 TTACGTCACAATCACTTTATAATCTACTTGAGCCATTACAAGACTTAACACAAAAAGAAA 2472 Query 6038 TTGATGACGGCTTTGTATATGCTGATACAGATAGTTTATTTATTAAA 6084 |||| ||| |||| |||| ||||||||||||||||| | ||||| Sbjct 2471 TTGACGACAACTTTATATACTGTGATACAGATAGTTTATATCTTAAA 2425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60341702886050