Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_024355.1 Length=93794 Score E Sequences producing significant alignments: (Bits) Value seq2740 241 8e-59 >seq2740 Length=4841 Score = 241 bits (266), Expect = 8e-59 Identities = 381/538 (71%), Gaps = 16/538 (3%) Strand=Plus/Minus Query 33749 AATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAA 33808 ||||||| || | ||||| |||||||| |||||||| || |||||||||||| || | Sbjct 4335 AATCTGGTCAGACATTTGGTGACTATGCAGAGTATTTCGAGTCACAAAGTGGTCAAGCTA 4276 Query 33809 TTCCTACTGGTAATATAGTTACACTTGATGGTAGATTTATAAGAAAAGCACAAGTCAATG 33868 |||| | |||| || || || | ||||| | | || |||||||||||||| |||| Sbjct 4275 TTCCAAACGGTATAATCGTAACTTTAGATGGGCGTTATACCAGAAAAGCACAAGTTAATG 4216 Query 33869 ATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTCC 33928 | | ||||| || |||||||||| ||||| || ||| | ||||| ||||| | |||| Sbjct 4215 ACAAGCCAATTGGCGTTATATCTGGTACAGCTGGGGTTGTGTTAGGTGACCAGTTATTCC 4156 Query 33929 ACCATAAAGACAAATATCTTAAAAATGAATTTGGCGGAGTTATTACTGAAAATGTCAAAA 33988 | |||||||||| || | | ||| ||||||| || | || | |||||| | ||| | Sbjct 4155 ATCATAAAGACAGATTTATAAAAGATGAATTCGGAGTTGTGGTAACTGAACA--ACAAGA 4098 Query 33989 A---AGAATGGCAAGATGATGCTGGT-AATTGGTATTCAGATACAGTAGAAATGCCAGTT 34044 | ||| | || | ||| | ||| || | || | ||| | ||| || ||| | Sbjct 4097 AGTTGAAATTGTAA-AAGATACAGGTGAAGTCGT-TAAAGAATTACGAGATATTCCATTA 4040 Query 34045 AAAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTGTCTCGTGCTGAACGACCA 34104 ||||| || | |||||| | ||||| ||| || | ||| |||| ||||| Sbjct 4039 GTTAATCCTGAATACGACGAA------AATGAAGATTATTTGGCGCGTTCTGATAGACCA 3986 Query 34105 GAATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAA 34164 |||||||| || |||||| | | |||||| ||| | ||||| ||| || || ||| Sbjct 3985 GAATGGAATGTCGTAGGTTTGACTGGTCAAATATTCACAAGAATTGATAACACAGTTAAA 3926 Query 34165 GAAAATGATTATAT-TAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTA 34223 | ||||||||||| |||| | | || ||| | ||||| ||||||||| | |||||||| Sbjct 3925 GTCAATGATTATATAAAAGCTAAT-AATGGTATTGGAACAAAAGATAATGTGAATGGTTA 3867 Query 34224 TTATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCA 34281 || |||||| |||| || || || || |||| || ||||| ||||| || ||| Sbjct 3866 CTACAGAGTTATGGAAATCACAACGCCTTACGATACTGAAAAAGGATATGGCGTAGCA 3809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299928519553375