Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq328 116 7e-21 >seq328 Length=376668 Score = 116 bits (128), Expect = 7e-21 Identities = 209/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 || |||||| ||| |||||| | ||||||||||| || | | ||||| || ||||| Sbjct 43963 ACTCATGACGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 44022 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGA-AGA 183128 |||| |||| ||||||||||| ||||||||||| |||||||| ||||| || ||| Sbjct 44023 GGTTTCCTACGCATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA 44082 Query 183129 -TGCTTTGAGTT--ATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCC 183185 || || | | ||||| |||| |||| || | | || ||| || || Sbjct 44083 GCACTAGCAGATGCAATTTATCTTAATGACAAATA--TAGCA--TGGATGGTCGTGACCC 44138 Query 183186 TAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGA 183245 | || | || || ||||||||||| || || || | || ||| | |||||||| Sbjct 44139 GAGTGGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGATGGAAAGA 44198 Query 183246 AAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305 |||| || |||||||| || || |||||||| |||| | | ||||| || ||||| Sbjct 44199 AAGAGAAATTTTTGGAAAAATTAGGTATATGAACTATGCAGGATGTAAGAGAAAGTTTGA 44258 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 182414 TTATACAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAAT 182473 ||||||||||||| || || ||||| ||||||||||||| |||||||||||| |||||| Sbjct 43131 TTATACAGGTAGATGCCCATAATATTGTACCTTGTTGGGTGGCTTCTGACAAACAAGAAT 43190 Query 182474 ACGGTGCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAAT 182533 | |||||||| || |||| || || | |||| ||| || | | | ||||||| Sbjct 43191 ATTCCGCAAGAACAATACGAAACAAAATCAATAATAAATTACCAGAGTTTTTAACAGAAT 43250 Query 182534 TTCC 182537 | || Sbjct 43251 TCCC 43254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903141023588000