Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq328 116 7e-21
>seq328
Length=376668
Score = 116 bits (128), Expect = 7e-21
Identities = 209/300 (70%), Gaps = 8/300 (3%)
Strand=Plus/Plus
Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069
|| |||||| ||| |||||| | ||||||||||| || | | ||||| || |||||
Sbjct 43963 ACTCATGACGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 44022
Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGA-AGA 183128
|||| |||| ||||||||||| ||||||||||| |||||||| ||||| || |||
Sbjct 44023 GGTTTCCTACGCATGTACTGGGCAAAAAAGATACTAGAATGGACTGATACTCCAGATAGA 44082
Query 183129 -TGCTTTGAGTT--ATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCC 183185
|| || | | ||||| |||| |||| || | | || ||| || ||
Sbjct 44083 GCACTAGCAGATGCAATTTATCTTAATGACAAATA--TAGCA--TGGATGGTCGTGACCC 44138
Query 183186 TAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGA 183245
| || | || || ||||||||||| || || || | || ||| | ||||||||
Sbjct 44139 GAGTGGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGATGGAAAGA 44198
Query 183246 AAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGA 183305
|||| || |||||||| || || |||||||| |||| | | ||||| || |||||
Sbjct 44199 AAGAGAAATTTTTGGAAAAATTAGGTATATGAACTATGCAGGATGTAAGAGAAAGTTTGA 44258
Score = 93.3 bits (102), Expect = 8e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 182414 TTATACAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAAT 182473
||||||||||||| || || ||||| ||||||||||||| |||||||||||| ||||||
Sbjct 43131 TTATACAGGTAGATGCCCATAATATTGTACCTTGTTGGGTGGCTTCTGACAAACAAGAAT 43190
Query 182474 ACGGTGCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAAT 182533
| |||||||| || |||| || || | |||| ||| || | | | |||||||
Sbjct 43191 ATTCCGCAAGAACAATACGAAACAAAATCAATAATAAATTACCAGAGTTTTTAACAGAAT 43250
Query 182534 TTCC 182537
| ||
Sbjct 43251 TCCC 43254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903141023588000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |