Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq800 104 6e-17 seq1768 86.0 1e-11 >seq800 Length=206207 Score = 104 bits (114), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | ||||||||| | |||| ||| | ||||||||||| || | Sbjct 169167 CAAAAATCTGGTAAACCTTTAAAAGCAATTAAAGCACGATTGAAAGGTAAAGAAGGAAGA 169226 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 || ||||| ||| | |||||||||||||| |||||| ||| ||| |||||| || ||| Sbjct 169227 ATACGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCTGCTCGAACTGTAATTACCCCT 169286 Query 305066 GATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123 ||| |||||| || || ||||| | || || || | |||||| ||| | | Sbjct 169287 GAT--CCAAATTTGAGAATTGATGAAGTTGGTGTACCTCGTACTATTGCTCAAAATATGA 169344 Query 305124 CATTTCCAGAGAAAGTTA 305141 ||||||| |||| |||| Sbjct 169345 CATTTCCTGAGATTGTTA 169362 >seq1768 Length=37857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 279071 CCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTT 279130 || |||||||| ||||| || ||||| | || || ||| ||| | || || Sbjct 32291 CCTAAACTTGAAGATGCTAATGATGCTGGTACCAGAAATTCGATAGATTGTACATTGATT 32232 Query 279131 CTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGT 279190 | |||||||||||||| ||| |||| || || |||| ||| ||| |||||||| Sbjct 32231 TTAACTGAGGGAGATTCAGCTAAATCATTGGCAGTTTCTGGATTAGGTGTGGTTGGTCGT 32172 Query 279191 GATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGA 279240 ||||||||||| || || ||| | ||||||||| | | |||| ||| || Sbjct 32171 GATAAATATGGAGTTTTCCCTCTTAGAGGTAAATTGTTAAATGTTCGCGA 32122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186448995516925