Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq800 104 6e-17
seq1768 86.0 1e-11
>seq800
Length=206207
Score = 104 bits (114), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| |||||| | ||||||||| | |||| ||| | ||||||||||| || |
Sbjct 169167 CAAAAATCTGGTAAACCTTTAAAAGCAATTAAAGCACGATTGAAAGGTAAAGAAGGAAGA 169226
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
|| ||||| ||| | |||||||||||||| |||||| ||| ||| |||||| || |||
Sbjct 169227 ATACGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCTGCTCGAACTGTAATTACCCCT 169286
Query 305066 GATTCTCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAA 305123
||| |||||| || || ||||| | || || || | |||||| ||| | |
Sbjct 169287 GAT--CCAAATTTGAGAATTGATGAAGTTGGTGTACCTCGTACTATTGCTCAAAATATGA 169344
Query 305124 CATTTCCAGAGAAAGTTA 305141
||||||| |||| ||||
Sbjct 169345 CATTTCCTGAGATTGTTA 169362
>seq1768
Length=37857
Score = 86.0 bits (94), Expect = 1e-11
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 279071 CCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTT 279130
|| |||||||| ||||| || ||||| | || || ||| ||| | || ||
Sbjct 32291 CCTAAACTTGAAGATGCTAATGATGCTGGTACCAGAAATTCGATAGATTGTACATTGATT 32232
Query 279131 CTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGT 279190
| |||||||||||||| ||| |||| || || |||| ||| ||| ||||||||
Sbjct 32231 TTAACTGAGGGAGATTCAGCTAAATCATTGGCAGTTTCTGGATTAGGTGTGGTTGGTCGT 32172
Query 279191 GATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGA 279240
||||||||||| || || ||| | ||||||||| | | |||| ||| ||
Sbjct 32171 GATAAATATGGAGTTTTCCCTCTTAGAGGTAAATTGTTAAATGTTCGCGA 32122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186448995516925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |