Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq3309 111 4e-20
>seq3309
Length=43154
Score = 111 bits (122), Expect = 4e-20
Identities = 427/658 (65%), Gaps = 36/658 (5%)
Strand=Plus/Minus
Query 25752 TCAAGCAGTACGGCACCACCGCCGTCGACGGCGCCATGATCCGCTTCGCCGGCGCCTACC 25811
|||||||| |||||| |||| ||||||| | | ||||| ||||| || |
Sbjct 43128 TCAAGCAGATGGGCACCCTTACCGTGGACGGCGTGCAGCTGCGCTTTACCGGCTCCATTC 43069
Query 25812 AGCACGAGGACACCAAGGAAGTCGATGCGGTGGAGATCGTCGTGCGCGGCCGGCATACCG 25871
||| ||| |||||| ||||| | ||||||||| | |||||||| ||||| || | |
Sbjct 43068 AGCGCGACGACACCGGCGAAGTGCAGGCGGTGGAGCTGGTCGTGCGTGGCCGCCACAAGG 43009
Query 25872 AAATTGATTTCGGCACCGCCAAGGCCGGCGCCA-AAGCACCGTTCAAGGTCAAGTCCT-C 25929
| | || | |||| ||| |||||| ||||||| |||||| |||| |
Sbjct 43008 AGCTGGACTCCGGCGAGTGGAAGACCGGCGAATCAAGCACCAC-CAAGGT---GTCCGGC 42953
Query 25930 GCTGAC--CTACTACAAGATGACCGTCAACGGCGAAGTCTGGTGCGAGCTGGATTTCGTG 25987
| || |||| |||| ||||| ||||||||||||| | |||| | || | |||
Sbjct 42952 ACCAACAGCTACGCCAAGCTGACCATCAACGGCGAAGTGCTCTACGAGATTGACCTGGTG 42893
Query 25988 AACTTCGTCGAAGTCGTTTTCGGCGAGGACCGCCTGGCCGCGCAGCGCCGCGCCATCGGC 26047
||| | | | |||| ||| ||||| ||| ||||| || ||| |||||
Sbjct 42892 AACATGATTCACATCGTGGACGGTACGGACCTGATGGAAGCGCACCGTAACGCGCTCGGC 42833
Query 26048 CTGTAAC----CCGGTCGCCGCCCACCTCGCCCGGGCGGGCTGACCTGCCCGGGC-ACAC 26102
|||||| |||| | || ||| ||| || | ||| || || | ||
Sbjct 42832 CTGTAATTAATCCGGCAGG-GCAAACCCTGCC---GCCTTTT-ACC--CCTTAGCGAGAC 42780
Query 26103 ATCAACTCTTCATCGCTTTGACCACCATGGaaaaaaaaaTCGGCAACCATTACCTTGGAC 26162
|||| |||| || | |||| |||||||| || || |||||
Sbjct 42779 ATCA-----TCATGACTGACAAAACCACCGAAAAAAA---------CCGTTGAGCTGGAC 42734
Query 26163 ACCCCGATCACGCGCGGGGAG-CAGACGATCAGCACGATCACCGTGCGCAAGCCCGGCGC 26221
||||||||| ||| || | | || ||| | | ||| |||||||||||| |
Sbjct 42733 ACCCCGATCCTGCGTGGCAAAACCGA-GATTAAAAGCATCGTCGTGCGCAAGCCGCAGTC 42675
Query 26222 CGGCGAGCTGCGCGGCGTGAGCCTGATGGACCTGATGCGCATGGACGTGACCGCCCTGCA 26281
||||| ||||||||| | ||||| || |||||| ||||||||||| ||| ||
Sbjct 42674 CGGCGCGCTGCGCGGTACGCGCCTGCAGGCGCTGATGGACATGGACGTGAACGCGATGAT 42615
Query 26282 CACGGTGCTGCCGCGCATCACCACGCCGACGCTGACCACCGCCGACGTGAGCCGCCTGGA 26341
||| |||||||||||| | || || ||| |||||||||| || | | | ||||
Sbjct 42614 CACCGTGCTGCCGCGCGTAACTACCCCGGCGCTGACCACGCATGAAATCACCGAGATGGA 42555
Query 26342 TCCGGCCGACCTGACCCAACTGGCCGTCGAGGTGACCGGTTTTTTGCTGACGAAGGCG 26399
|| ||||| ||| ||| |||| |||||| | |||||| |||| |||| ||
Sbjct 42554 CCCCGCCGATCTGGTGAGCCTGTCCGTTGAGGTGGTCACTTTTTTACTGAAGAAGTCG 42497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127848466729400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |