Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq3309 111 4e-20 >seq3309 Length=43154 Score = 111 bits (122), Expect = 4e-20 Identities = 427/658 (65%), Gaps = 36/658 (5%) Strand=Plus/Minus Query 25752 TCAAGCAGTACGGCACCACCGCCGTCGACGGCGCCATGATCCGCTTCGCCGGCGCCTACC 25811 |||||||| |||||| |||| ||||||| | | ||||| ||||| || | Sbjct 43128 TCAAGCAGATGGGCACCCTTACCGTGGACGGCGTGCAGCTGCGCTTTACCGGCTCCATTC 43069 Query 25812 AGCACGAGGACACCAAGGAAGTCGATGCGGTGGAGATCGTCGTGCGCGGCCGGCATACCG 25871 ||| ||| |||||| ||||| | ||||||||| | |||||||| ||||| || | | Sbjct 43068 AGCGCGACGACACCGGCGAAGTGCAGGCGGTGGAGCTGGTCGTGCGTGGCCGCCACAAGG 43009 Query 25872 AAATTGATTTCGGCACCGCCAAGGCCGGCGCCA-AAGCACCGTTCAAGGTCAAGTCCT-C 25929 | | || | |||| ||| |||||| ||||||| |||||| |||| | Sbjct 43008 AGCTGGACTCCGGCGAGTGGAAGACCGGCGAATCAAGCACCAC-CAAGGT---GTCCGGC 42953 Query 25930 GCTGAC--CTACTACAAGATGACCGTCAACGGCGAAGTCTGGTGCGAGCTGGATTTCGTG 25987 | || |||| |||| ||||| ||||||||||||| | |||| | || | ||| Sbjct 42952 ACCAACAGCTACGCCAAGCTGACCATCAACGGCGAAGTGCTCTACGAGATTGACCTGGTG 42893 Query 25988 AACTTCGTCGAAGTCGTTTTCGGCGAGGACCGCCTGGCCGCGCAGCGCCGCGCCATCGGC 26047 ||| | | | |||| ||| ||||| ||| ||||| || ||| ||||| Sbjct 42892 AACATGATTCACATCGTGGACGGTACGGACCTGATGGAAGCGCACCGTAACGCGCTCGGC 42833 Query 26048 CTGTAAC----CCGGTCGCCGCCCACCTCGCCCGGGCGGGCTGACCTGCCCGGGC-ACAC 26102 |||||| |||| | || ||| ||| || | ||| || || | || Sbjct 42832 CTGTAATTAATCCGGCAGG-GCAAACCCTGCC---GCCTTTT-ACC--CCTTAGCGAGAC 42780 Query 26103 ATCAACTCTTCATCGCTTTGACCACCATGGaaaaaaaaaTCGGCAACCATTACCTTGGAC 26162 |||| |||| || | |||| |||||||| || || ||||| Sbjct 42779 ATCA-----TCATGACTGACAAAACCACCGAAAAAAA---------CCGTTGAGCTGGAC 42734 Query 26163 ACCCCGATCACGCGCGGGGAG-CAGACGATCAGCACGATCACCGTGCGCAAGCCCGGCGC 26221 ||||||||| ||| || | | || ||| | | ||| |||||||||||| | Sbjct 42733 ACCCCGATCCTGCGTGGCAAAACCGA-GATTAAAAGCATCGTCGTGCGCAAGCCGCAGTC 42675 Query 26222 CGGCGAGCTGCGCGGCGTGAGCCTGATGGACCTGATGCGCATGGACGTGACCGCCCTGCA 26281 ||||| ||||||||| | ||||| || |||||| ||||||||||| ||| || Sbjct 42674 CGGCGCGCTGCGCGGTACGCGCCTGCAGGCGCTGATGGACATGGACGTGAACGCGATGAT 42615 Query 26282 CACGGTGCTGCCGCGCATCACCACGCCGACGCTGACCACCGCCGACGTGAGCCGCCTGGA 26341 ||| |||||||||||| | || || ||| |||||||||| || | | | |||| Sbjct 42614 CACCGTGCTGCCGCGCGTAACTACCCCGGCGCTGACCACGCATGAAATCACCGAGATGGA 42555 Query 26342 TCCGGCCGACCTGACCCAACTGGCCGTCGAGGTGACCGGTTTTTTGCTGACGAAGGCG 26399 || ||||| ||| ||| |||| |||||| | |||||| |||| |||| || Sbjct 42554 CCCCGCCGATCTGGTGAGCCTGTCCGTTGAGGTGGTCACTTTTTTACTGAAGAAGTCG 42497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127848466729400