Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2302 127 1e-24
seq276 107 1e-18
seq86 82.4 5e-11
>seq2302
Length=121279
Score = 127 bits (140), Expect = 1e-24
Identities = 171/234 (73%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| ||||| || || || || ||||| || |||||||| || ||
Sbjct 54331 ACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 54390
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| |||| || | ||| ||||||||||| |||||||| || || || | ||
Sbjct 54391 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGG 54450
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| || || | || |||| || | || || ||| || |
Sbjct 54451 AATACCTTCTTTGTCTTGGATCTT-AGCTTTTACATTTTCAATGGAATCTGATGACTCAA 54509
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754
| || | ||||| |||||||| || || ||||| |||||||||||||| ||||
Sbjct 54510 CTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT-GTTG 54562
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || |||||||| || || || |||||||| |||||||| |||||
Sbjct 54103 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 54162
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | ||| ||||||||||| |||||||| || || ||| | ||
Sbjct 54163 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 54222
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| || || | || |||| || | || || ||||||||
Sbjct 54223 GATACCTTCTTTGTCTTGGATCTT-GGCTTTTACATTTTCAATGGAATCAGATGATTCCA 54281
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || | || ||||||||||| ||||||
Sbjct 54282 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331
Score = 114 bits (126), Expect = 8e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || |||||||| || || || |||||||| |||||||| |||||
Sbjct 53191 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53250
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | ||| ||||||||||| |||||||| ||||| ||| | ||
Sbjct 53251 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53310
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || | | ||||| || | || || ||||||||
Sbjct 53311 GATACCTTCCTTGTCTTGGATCTT-GGCCTTAACATTTTCAATGGAATCAGATGATTCCA 53369
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || | || || || ||||| ||||||
Sbjct 53370 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53419
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || |||||||| || || || |||||||| ||||| || || ||
Sbjct 52735 ACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGA 52794
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| |||| || | ||| ||||||||||| |||||||| || || ||| | ||
Sbjct 52795 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 52854
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || | | ||||| || | || || ||||||||
Sbjct 52855 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATGGAATCAGATGATTCCA 52913
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || | || || || ||||| ||||||
Sbjct 52914 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 52963
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || |||||||| || || || |||||||| |||||||| |||||
Sbjct 53647 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53706
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | ||| ||||||||||| |||||||| ||||| ||| | ||
Sbjct 53707 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53766
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || | | ||||| || | | || |||||||
Sbjct 53767 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATAGAATCAGACGATTCCA 53825
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || ||||| | || || || ||||| ||||||
Sbjct 53826 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | || |||||||| || || || |||||||| |||||||| |||||
Sbjct 53419 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53478
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || ||| |||| || | ||| ||||||||||| |||||||| || || ||| | ||
Sbjct 53479 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 53538
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || | | ||||| || | | || |||||||
Sbjct 53539 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATAGAATCAGACGATTCCA 53597
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || ||||| | || || || ||||| ||||||
Sbjct 53598 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647
Score = 93.3 bits (102), Expect = 3e-14
Identities = 153/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| |||||||| || || || |||||||| ||||| || ||||| || || ||| |
Sbjct 52519 ACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCC 52578
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| || | ||| ||||||||||| |||| ||| ||||| ||| | || | |||||| ||
Sbjct 52579 ATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 52638
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| || || ||| |||| || | | || ||||| || || | || |
Sbjct 52639 GTCTTGGATCTTGGCCTTC-ACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAA 52697
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || ||||| | || ||||| ||||| ||||||
Sbjct 52698 TGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 52735
>seq276
Length=376631
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | || || || || || ||||| || || || || |||||
Sbjct 240738 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240679
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| |||||||||||||| || ||||| |||||| | ||
Sbjct 240678 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240619
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| |||||| |||| |||| || | | ||| |||||| ||
Sbjct 240618 ATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGATGATTCTAC 240560
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || || ||||| || || | ||||| |||||||| |||||
Sbjct 240559 TTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | || || || || || ||||| || || || || |||||
Sbjct 240966 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240907
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| |||||||||||||| || ||||| |||||| | ||
Sbjct 240906 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240847
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| |||||| |||| |||| || | | ||| ||||| ||
Sbjct 240846 ATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGACGATTCTAC 240788
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 240787 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | || || || || || ||||| || || || || |||||
Sbjct 241422 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241363
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| |||||||||||||| || ||||| |||||| | ||
Sbjct 241362 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241303
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| |||||| |||| |||| || | | ||| ||||| ||
Sbjct 241302 ATCCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGACGATTCTAC 241244
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 241243 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | || || || || || ||||| || || || || |||||
Sbjct 241650 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241591
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| |||||||||||||| || ||||| |||||| | ||
Sbjct 241590 AAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241531
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| |||||| |||| |||| || | | ||| ||||| ||
Sbjct 241530 ATCCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGAAGATTCTAC 241472
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 241471 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | ||| | || || || || || ||||| || || || || || ||
Sbjct 241194 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGAT 241135
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||||||| |||||||||||||| || ||||| |||||| | ||
Sbjct 241134 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241075
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| ||||||| |||| |||| || | | || ||||| ||
Sbjct 241074 ATTCCTTCTTTGTCTTGAATTTTCGCTTTC-ACATTTTCAATAGAATCTGACGATTCTAC 241016
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 241015 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968
>seq86
Length=815150
Score = 82.4 bits (90), Expect = 5e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||||||||||| | | ||||| || || || |||||||| ||||||||||| |
Sbjct 596439 CACCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTG 596498
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| | || || | || || | |||||| |||||||| |||||||| |||||||| | |
Sbjct 596499 ACAAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAG 596558
Query 33641 GCACACCT 33648
| | ||||
Sbjct 596559 GAATACCT 596566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328608154536000
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