Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2302 127 1e-24 seq276 107 1e-18 seq86 82.4 5e-11 >seq2302 Length=121279 Score = 127 bits (140), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||| || || || || ||||| || |||||||| || || Sbjct 54331 ACCACCACGGAGACGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 54390 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| |||| || | ||| ||||||||||| |||||||| || || || | || Sbjct 54391 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGG 54450 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || |||| || | || || ||| || | Sbjct 54451 AATACCTTCTTTGTCTTGGATCTT-AGCTTTTACATTTTCAATGGAATCTGATGACTCAA 54509 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| |||||||| || || ||||| |||||||||||||| |||| Sbjct 54510 CTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT-GTTG 54562 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || |||||||| || || || |||||||| |||||||| ||||| Sbjct 54103 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 54162 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | ||| ||||||||||| |||||||| || || ||| | || Sbjct 54163 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 54222 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | || |||| || | || || |||||||| Sbjct 54223 GATACCTTCTTTGTCTTGGATCTT-GGCTTTTACATTTTCAATGGAATCAGATGATTCCA 54281 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || ||||||||||| |||||| Sbjct 54282 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCATA 54331 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || |||||||| || || || |||||||| |||||||| ||||| Sbjct 53191 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53250 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | ||| ||||||||||| |||||||| ||||| ||| | || Sbjct 53251 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53310 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | ||||| || | || || |||||||| Sbjct 53311 GATACCTTCCTTGTCTTGGATCTT-GGCCTTAACATTTTCAATGGAATCAGATGATTCCA 53369 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || || ||||| |||||| Sbjct 53370 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 53419 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || |||||||| || || || |||||||| ||||| || || || Sbjct 52735 ACCACCTCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGA 52794 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| |||| || | ||| ||||||||||| |||||||| || || ||| | || Sbjct 52795 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 52854 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | ||||| || | || || |||||||| Sbjct 52855 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATGGAATCAGATGATTCCA 52913 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || || ||||| |||||| Sbjct 52914 CCTCCAATGTAATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCATA 52963 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || |||||||| || || || |||||||| |||||||| ||||| Sbjct 53647 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53706 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | ||| ||||||||||| |||||||| ||||| ||| | || Sbjct 53707 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGG 53766 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | ||||| || | | || ||||||| Sbjct 53767 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATAGAATCAGACGATTCCA 53825 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || ||||| | || || || ||||| |||||| Sbjct 53826 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53875 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || |||||||| || || || |||||||| |||||||| ||||| Sbjct 53419 ACCACCTCGGAGTCGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGA 53478 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| || | ||| ||||||||||| |||||||| || || ||| | || Sbjct 53479 AAGGGTACGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 53538 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || | | ||||| || | | || ||||||| Sbjct 53539 GATACCTTCCTTGTCTTGGATCTT-AGCCTTAACATTTTCAATAGAATCAGACGATTCCA 53597 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || ||||| | || || || ||||| |||||| Sbjct 53598 CTTCCAATGTAATGGTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCATA 53647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| |||||||| || || || |||||||| ||||| || ||||| || || ||| | Sbjct 52519 ACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCC 52578 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||| ||||||||||| |||| ||| ||||| ||| | || | |||||| || Sbjct 52579 ATCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTT 52638 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| |||| || | | || ||||| || || | || | Sbjct 52639 GTCTTGGATCTTGGCCTTC-ACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAA 52697 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| | || ||||| ||||| |||||| Sbjct 52698 TGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 52735 >seq276 Length=376631 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | || || || || || ||||| || || || || ||||| Sbjct 240738 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240679 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| |||||||||||||| || ||||| |||||| | || Sbjct 240678 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240619 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| |||| |||| || | | ||| |||||| || Sbjct 240618 ATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGATGATTCTAC 240560 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || | ||||| |||||||| ||||| Sbjct 240559 TTCCAAAGTTATGGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 240512 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | || || || || || ||||| || || || || ||||| Sbjct 240966 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 240907 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| |||||||||||||| || ||||| |||||| | || Sbjct 240906 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 240847 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| |||| |||| || | | ||| ||||| || Sbjct 240846 ATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGACGATTCTAC 240788 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 240787 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240740 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | || || || || || ||||| || || || || ||||| Sbjct 241422 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241363 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| |||||||||||||| || ||||| |||||| | || Sbjct 241362 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241303 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| |||| |||| || | | ||| ||||| || Sbjct 241302 ATCCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGACGATTCTAC 241244 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 241243 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241196 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | || || || || || ||||| || || || || ||||| Sbjct 241650 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCGGAT 241591 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| |||||||||||||| || ||||| |||||| | || Sbjct 241590 AAAGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241531 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| |||| |||| || | | ||| ||||| || Sbjct 241530 ATCCCTTCTTTGTCTTGAATTTTAGCTTTC-ACATTTTCAATAGAGTCTGAAGATTCTAC 241472 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 241471 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 241424 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | || || || || || ||||| || || || || || || Sbjct 241194 CCACCTCGAAGACGGAGTACTAAGTGAAGTGTTGATTCTTTCTGAATATTATAGTCAGAT 241135 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| |||||||||||||| || ||||| |||||| | || Sbjct 241134 AACGTACGGCCATCTTCCAATTGCTTTCCGGCAAAAATTAATCGCTGTTGATCTGGTGGG 241075 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||||| |||| |||| || | | || ||||| || Sbjct 241074 ATTCCTTCTTTGTCTTGAATTTTCGCTTTC-ACATTTTCAATAGAATCTGACGATTCTAC 241016 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 241015 TTCCAAAGTGATGGTTTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 240968 >seq86 Length=815150 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||||||||| | | ||||| || || || |||||||| ||||||||||| | Sbjct 596439 CACCACCTCTCAGTCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTG 596498 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || || | || || | |||||| |||||||| |||||||| |||||||| | | Sbjct 596499 ACAAAGTACGGCCATCTTCAAGTTGTTTGCCGGCAAATATCAAACGTTGCTGATCCGGAG 596558 Query 33641 GCACACCT 33648 | | |||| Sbjct 596559 GAATACCT 596566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328608154536000