Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2302 111 4e-19 seq276 111 4e-19 seq231 87.8 4e-12 >seq2302 Length=121279 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||| ||| |||||| || | ||| Sbjct 52719 AAGACCCTCACAGGAAAGACCATTACATTGGAAGTAGAATCTTCTGATTCAATTGAAAAT 52660 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | || ||||| Sbjct 52659 GTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGCAACGTCTGATCTTT 52600 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||||||| | || | |||| || ||| | || ||||| ||| Sbjct 52599 GCCGGAAAGCAACTTGAAGATGGACGTACCCTTTCCGACTATAACATTCAAAAAGAATCT 52540 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||| | || || Sbjct 52539 ACCCTTCACTTGGTGTTGCGTCTCCG 52514 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| |||||||||||||| || || || Sbjct 54555 CAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCAGAT 54496 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| ||||| ||||| ||||| |||||||| ||| || ||| ||| Sbjct 54495 TCCATTGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATTCCACCTGACCAACAA 54436 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||||||||| | ||||| ||| | || | | || |||||| || Sbjct 54435 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTACAACATC 54376 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||| | || ||| | || || Sbjct 54375 CAGAAAGAATCTACCCTTCACTTAGTGTTGCGTCTCCG 54338 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||||||| ||||| | | ||| Sbjct 53631 AAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCTGATTCTATTGAAAAT 53572 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | | ||||| Sbjct 53571 GTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 53512 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 53511 GCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAACATTCAAAAAGAATCT 53452 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| |||| ||| Sbjct 53451 ACACTTCACTTGGTGTTGCGACTCCGA 53425 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||||||| ||||| | | ||| Sbjct 53859 AAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCTGATTCTATTGAAAAT 53800 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | | ||||| Sbjct 53799 GTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGCAACGTTTGATCTTT 53740 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 53739 GCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAACATTCAAAAAGAATCT 53680 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| |||| ||| Sbjct 53679 ACACTTCACTTGGTGTTGCGACTCCGA 53653 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || ||||| ||||| || || || ||||| |||||| ||||| | | Sbjct 54321 TTTGTAAAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCTGATTCCATT 54262 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 ||| ||||| ||||| ||||| |||||||| || || ||| ||| | | Sbjct 54261 GAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTG 54202 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| ||||||||||| | ||||| ||| | || | |||| |||||| | || ||| Sbjct 54201 ATCTTTGCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAACATTCAAAAA 54142 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| |||||| | || ||| |||| ||| Sbjct 54141 GAATCTACACTTCACTTGGTGTTGCGACTCCGA 54109 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || || ||||| |||||| ||||| | | ||| Sbjct 53403 AAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCTGATTCCATTGAAAAT 53344 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | | ||||| Sbjct 53343 GTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGCAACGTTTGATCTTT 53284 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 53283 GCCGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAACATTCAAAAAGAATCT 53224 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| |||| ||| Sbjct 53223 ACACTTCACTTGGTGTTGCGACTCCGA 53197 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||||||| ||||| | | ||| Sbjct 54087 AAGACCCTCACAGGAAAGACCATTACATTGGAAGTGGAATCGTCTGATTCTATTGAAAAT 54028 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || || ||| | | ||||| Sbjct 54027 GTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAACAACGTTTGATCTTT 53968 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 53967 GCTGGAAAGCAACTTGAAGACGGACGTACCCTTTCCGACTACAACATTCAAAAAGAATCT 53908 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| |||| ||| Sbjct 53907 ACACTTCACTTGGTGTTGCGACTCCGA 53881 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || || ||||| |||||| ||||| | | ||| Sbjct 52947 AAGACCCTCACTGGAAAGACCATTACATTGGAGGTGGAATCATCTGATTCCATTGAAAAT 52888 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | | ||||| Sbjct 52887 GTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 52828 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | | || || ||| | || ||||| ||| Sbjct 52827 GCCGGAAAGCAACTTGAAGACGGACGCACACTTTCTGACTATAACATTCAAAAAGAATCT 52768 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||| |||||||| Sbjct 52767 ACCCTTCACTTGGTGTTGCGACTTCGA 52741 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||| ||| || | |||||| ||||| ||||| || | |||||||||| | || Sbjct 52741 TCGAAGTCGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCAGAAAGTGT 52800 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||| ||||| || ||||||||||| ||||| | |||||||| Sbjct 52801 GCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTG 52845 >seq276 Length=376631 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| ||| ||| | | ||| Sbjct 241439 AAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCAGACTCTATTGAAAAT 241498 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || || || | || || Sbjct 241499 GTGAAAGCTAAA-ATTCAAGACAAAGAAGGGATCCCACCAGATCAACAGCGATTAATTTT 241557 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | ||||| |||| || || | |||||||| || Sbjct 241558 TGCCGGAAAGCAATTGGAAGATGGCCGTACTTTATCCGACTATAATATTCAGAAAGAATC 241617 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 241618 AACACTTCACTTAGTACTCCGTCTTCGA 241645 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||||||||||| ||| || ||| | | ||| Sbjct 240527 AAAACTCTTACTGGAAAAACCATAACTTTGGAAGTAGAATCATCAGACTCTATTGAAAAT 240586 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| ||||||||||| || || || || | || || Sbjct 240587 GTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCACCAGATCAACAGCGATTAATTTT 240645 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | || || |||| || || | |||||||| || Sbjct 240646 TGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAATATTCAGAAAGAATC 240705 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 240706 AACACTTCACTTAGTACTCCGTCTTCGA 240733 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| || ||| | | ||| Sbjct 240755 AAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTCAGACTCTATTGAAAAT 240814 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| ||||||||||| || || || || | || || Sbjct 240815 GTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCACCAGATCAACAGCGATTAATTTT 240873 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | || || |||| || || | |||||||| || Sbjct 240874 TGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAATATTCAGAAAGAATC 240933 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 240934 AACACTTCACTTAGTACTCCGTCTTCGA 240961 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| || ||| | | ||| Sbjct 241211 AAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTCAGACTCTATTGAAAAT 241270 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || || || | || || Sbjct 241271 GTGAAAGCTAAA-ATTCAAGACAAAGAAGGGATCCCACCAGATCAACAGCGATTAATTTT 241329 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | || || |||| || || | |||||||| || Sbjct 241330 TGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCCGACTATAATATTCAGAAAGAATC 241389 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 241390 AACACTTCACTTAGTACTCCGTCTTCGA 241417 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| || || | | ||| Sbjct 240983 AAAACCCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCGTCAGATTCTATTGAAAAT 241042 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| ||||||||||| || || || || | || || Sbjct 241043 GTGAAAGCGAAA-ATTCAAGACAAAGAAGGAATCCCACCAGATCAACAGCGATTAATTTT 241101 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | || || | || || || | |||||||| || Sbjct 241102 TGCCGGAAAGCAATTGGAAGATGGCCGTACGTTATCTGACTATAATATTCAGAAAGAATC 241161 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | | |||||| Sbjct 241162 AACACTTCACTTAGTACTCCGTCTTCGA 241189 >seq231 Length=580210 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || || ||| ||||| ||||| Sbjct 341003 AAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCAGACACTATCGAAAAT 340944 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || || ||| | | ||||| Sbjct 340943 GTCAAAGCCAAA-ATCCAAGATAAAGAAGGTATCCCACCCGATCAACAACGTTTGATCTT 340885 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | ||||||||| | || ||| | ||||| ||| |||| |||| || Sbjct 340884 CGCCGGCAAGCAGCTTGAAGATGGACGTACATTGTCTGATTATAACATCCA-AAAGGGTA 340826 Query 206364 TACTCTTCA 206372 | || |||| Sbjct 340825 TGCT-TTCA 340818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181458525759925