Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq276 93.3 4e-14 seq2302 91.5 1e-13 >seq276 Length=376631 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||| || |||||| | ||||| |||||| | || || |||| Sbjct 240707 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 240648 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| |||||||||||||| || || |||||||| || |||||| ||||| Sbjct 240647 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCA 240588 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | | || ||||| | || | ||||| ||||| ||||||| Sbjct 240587 CATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTT 240528 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 240527 TCACAAAGATTTGCAT 240512 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||| || |||||| | ||||| |||||| | || || |||| Sbjct 240935 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 240876 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| |||||||||||||| || || |||||||| || |||||| ||||| Sbjct 240875 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCA 240816 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | || || ||||| | || | ||||| ||||| || |||| Sbjct 240815 CATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 240756 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 240755 TCACAAAGATTTGCAT 240740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||| || ||||| | ||||| |||||| | || || |||| Sbjct 241163 TTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 241104 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| |||||||||||||| || || |||||||| || |||||| ||||| Sbjct 241103 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCA 241044 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || ||| | || || ||||| | || | ||||| ||||| || |||| Sbjct 241043 CATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 240984 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 240983 TCACAAAGATTTGCAT 240968 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||| || |||||| | ||||| |||||| | || || |||| Sbjct 241391 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 241332 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| |||||||||||||| || || |||||||| || |||||| ||||| Sbjct 241331 CAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCA 241272 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | || || ||||| | || | ||||| ||||| || |||| Sbjct 241271 CATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 241212 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 241211 TCACAAAGATTTGCAT 241196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| ||||| || |||||| | ||||| |||||| | || || |||| Sbjct 241619 TTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGG 241560 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | |||| |||||||||||||| || || |||||||| || |||||| ||||| Sbjct 241559 CAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCA 241500 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | | || ||||| | || | ||||| ||||| || |||| Sbjct 241499 CATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 241440 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 241439 TCACAAAGATTTGCAT 241424 >seq2302 Length=121279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||||||||||||| | |||||| Sbjct 53888 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53947 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | | |||| | ||| ||||||||||| || || ||||| || Sbjct 53948 TCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTG 54007 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || ||| | || |||||||| | || | Sbjct 54008 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 54067 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | ||| |||||||| Sbjct 54068 GTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || |||||||||||||| |||||| | |||||| | Sbjct 52520 CGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCA 52579 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| ||||| || || ||||| || || ||||| || Sbjct 52580 TCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTG 52639 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | | ||| | | || ||||| | || | Sbjct 52640 TCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATG 52699 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || |||| ||| || ||||| Sbjct 52700 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||||||||||||| | |||||| Sbjct 53432 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53491 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| | ||| ||||| ||||| || || ||||| || Sbjct 53492 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTG 53551 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || ||| | || |||||||| | || | Sbjct 53552 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53611 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | ||| || ||||| Sbjct 53612 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||||||||||||| | |||||| Sbjct 54116 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 54175 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| | ||| ||||| ||||| || || |||||||| Sbjct 54176 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 54235 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | | ||| | | ||||| || | || | Sbjct 54236 TCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATG 54295 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || |||| || || ||||| Sbjct 54296 GTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || || || | | | || ||||| || ||||||||||| | || || Sbjct 54344 CGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCG 54403 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| | ||| ||||| || || || || |||||||| Sbjct 54404 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTG 54463 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | | ||| | | ||| ||||| | || | Sbjct 54464 TCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATA 54523 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||||||||| |||||| | || ||||||||| Sbjct 54524 GTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 54559 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || ||||||||||||||||||||| | |||||| Sbjct 53660 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53719 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| | ||| || || ||||| || || ||||| || Sbjct 53720 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTG 53779 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | ||| | || ||| | || |||||||| | || | Sbjct 53780 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53839 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | ||| || ||||| Sbjct 53840 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476468663463000