Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq276 93.3 4e-14
seq2302 91.5 1e-13
>seq276
Length=376631
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||| || |||||| | ||||| |||||| | || || ||||
Sbjct 240707 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 240648
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| |||||||||||||| || || |||||||| || |||||| |||||
Sbjct 240647 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCA 240588
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| ||| | || || | | || ||||| | || | ||||| ||||| |||||||
Sbjct 240587 CATTTTCAATAGAGTCTGATGATTCTACTTCCAAAGTTATGGTTTTTCCAGTAAGAGTTT 240528
Query 132108 TTATGAAAATCTGCAT 132123
| | || || |||||
Sbjct 240527 TCACAAAGATTTGCAT 240512
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||| || |||||| | ||||| |||||| | || || ||||
Sbjct 240935 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 240876
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| |||||||||||||| || || |||||||| || |||||| |||||
Sbjct 240875 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCA 240816
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| ||| | || || | || || ||||| | || | ||||| ||||| || ||||
Sbjct 240815 CATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 240756
Query 132108 TTATGAAAATCTGCAT 132123
| | || || |||||
Sbjct 240755 TCACAAAGATTTGCAT 240740
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||| || ||||| | ||||| |||||| | || || ||||
Sbjct 241163 TTGATTCTTTCTGAATATTATAGTCAGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 241104
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| |||||||||||||| || || |||||||| || |||||| |||||
Sbjct 241103 CAAAAATTAATCGCTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATTTTCGCTTTCA 241044
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| ||| | || ||| | || || ||||| | || | ||||| ||||| || ||||
Sbjct 241043 CATTTTCAATAGAATCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 240984
Query 132108 TTATGAAAATCTGCAT 132123
| | || || |||||
Sbjct 240983 TCACAAAGATTTGCAT 240968
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||| || |||||| | ||||| |||||| | || || ||||
Sbjct 241391 TTGATTCTTTCTGAATATTATAGTCGGATAACGTACGGCCATCTTCCAATTGCTTTCCGG 241332
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| |||||||||||||| || || |||||||| || |||||| |||||
Sbjct 241331 CAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCA 241272
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| ||| | || || | || || ||||| | || | ||||| ||||| || ||||
Sbjct 241271 CATTTTCAATAGAGTCTGACGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 241212
Query 132108 TTATGAAAATCTGCAT 132123
| | || || |||||
Sbjct 241211 TCACAAAGATTTGCAT 241196
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| ||||| ||||| || |||||| | ||||| |||||| | || || ||||
Sbjct 241619 TTGATTCTTTCTGAATATTATAGTCGGATAAAGTACGGCCATCTTCCAATTGCTTTCCGG 241560
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||| |||||||||||||| || || |||||||| || |||||| |||||
Sbjct 241559 CAAAAATTAATCGCTGTTGATCTGGTGGGATCCCTTCTTTGTCTTGAATTTTAGCTTTCA 241500
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| ||| | || || | | || ||||| | || | ||||| ||||| || ||||
Sbjct 241499 CATTTTCAATAGAGTCTGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGGGTTT 241440
Query 132108 TTATGAAAATCTGCAT 132123
| | || || |||||
Sbjct 241439 TCACAAAGATTTGCAT 241424
>seq2302
Length=121279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || ||||||||||||||||||||| | ||||||
Sbjct 53888 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53947
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || || | | |||| | ||| ||||||||||| || || ||||| ||
Sbjct 53948 TCTTCAAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCCTTG 54007
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | ||| | || ||| | || |||||||| | || |
Sbjct 54008 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 54067
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || || || | ||| ||||||||
Sbjct 54068 GTCTTTCCTGTGAGGGTCTTAACGAAGATCTGCAT 54102
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | | || |||||||||||||| |||||| | |||||| |
Sbjct 52520 CGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAGTCGGAAAGGGTACGTCCA 52579
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | |||| ||||| || || ||||| || || ||||| ||
Sbjct 52580 TCTTCAAGTTGCTTTCCGGCAAAGATCAGACGTTGCTGGTCTGGTGGGATACCTTCCTTG 52639
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || |||| | ||| | | ||| | | || ||||| | || |
Sbjct 52640 TCTTGGATCTTGGCCTTCACATTTTCAATTGAATCAGAAGATTCTACTTCCAATGTAATG 52699
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || || |||| ||| || |||||
Sbjct 52700 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 52734
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || ||||||||||||||||||||| | ||||||
Sbjct 53432 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53491
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | |||| | ||| ||||| ||||| || || ||||| ||
Sbjct 53492 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCCTTG 53551
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | ||| | || ||| | || |||||||| | || |
Sbjct 53552 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53611
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || || || | ||| || |||||
Sbjct 53612 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53646
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || ||||||||||||||||||||| | ||||||
Sbjct 54116 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 54175
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | |||| | ||| ||||| ||||| || || ||||||||
Sbjct 54176 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 54235
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || ||| | | ||| | | ||| | | ||||| || | || |
Sbjct 54236 TCTTGGATCTTGGCTTTTACATTTTCAATGGAATCAGATGATTCCACCTCCAATGTAATG 54295
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||| || || |||| || || |||||
Sbjct 54296 GTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 54330
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| || || || | | | || ||||| || ||||||||||| | || ||
Sbjct 54344 CGCAACACTAAGTGAAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGTGTGCGTCCG 54403
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | |||| | ||| ||||| || || || || ||||||||
Sbjct 54404 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCAGGTGGAATACCTTCTTTG 54463
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || ||| | | ||| | | ||| | | ||| ||||| | || |
Sbjct 54464 TCTTGGATCTTAGCTTTTACATTTTCAATGGAATCTGATGACTCAACTTCCAAAGTGATA 54523
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||||||||||| |||||| | || |||||||||
Sbjct 54524 GTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATG 54559
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| ||||| || | | || ||||||||||||||||||||| | ||||||
Sbjct 53660 CGCAACACCAAGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCG 53719
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| || || || |||| | |||| | ||| || || ||||| || || ||||| ||
Sbjct 53720 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGCTGGTCTGGTGGGATACCTTCCTTG 53779
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | ||| | || ||| | || |||||||| | || |
Sbjct 53780 TCTTGGATCTTAGCCTTAACATTTTCAATAGAATCAGACGATTCCACTTCCAATGTAATG 53839
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || || || | ||| || |||||
Sbjct 53840 GTCTTTCCTGTGAGGGTCTTAACGAAGATTTGCAT 53874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476468663463000
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