Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq182 98.7 3e-17
seq296 95.1 4e-16
seq279 95.1 4e-16
seq229 95.1 4e-16
>seq182
Length=725775
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 296657 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 296716
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 296717 CCTGGTTTCGGC 296728
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 714016 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 713957
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 713956 CCTGGTTTCGGC 713945
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 716199 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 716140
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 716139 CCTGGTTTCGGC 716128
Score = 86.0 bits (94), Expect = 2e-13
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716044 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 715990
>seq296
Length=620292
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 551780 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 551839
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 551840 CCTGGTTTCGGC 551851
>seq279
Length=1016871
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 419034 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 419093
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 419094 CCTGGTTTCGGC 419105
>seq229
Length=720724
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 203600 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 203541
Query 2829 CCGGGCTTCAGC 2840
|| || ||| ||
Sbjct 203540 CCTGGTTTCGGC 203529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15845452481625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |